Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1585 ATGGAGATTTTCACATCTACTCACGACCACGACTCAGAAGCATCATGCGAAACAGGTTCCCCGACAAGAGTGCAGAGCAGTGGGTGTTCGGACGAGGAAGTGATACTAGCGTCGTCGCGGCCCAAGAAGCGAGCGGGACGAAGAGTGTTCAAGGAGACCAGGCACCCCGTGTACCGCGGAGTGCGGCGGAGGAACAACAACAAGTGGGTCTGCGAGATGCGAGTTCCCAACAACAACTCGCGGATTTGGCTCGGCACCTACCGCACGCCCGAAATGGCGGCGAGGGCGCACGACGTTGCGGCCCTCGCGCTCAGGGGGAAGTCGGCCTGCCTCAATTTCGCCGACTCCGTGTGGCGCCTCACGGTGCCTGACACTACCGACGCGGAGGAGATACGGCGGGCGGCGGTGGAGGCTGCTGAGGCATTTGTGGCTGAGGATGTGAACCAACAGCGGAGGAGTGAAGAAATTGAAGAGCCCCTGCGGCTGCAACAGGAAGAGGCGATGTCGGAAGACGAAGAGTTGCATGAATTGCTTATGCGAATTGCGAATGAGCCATTGATGTCTCCTCCTCCTTGTGTGAGAGATGGCAGTGGCTGGAATGACGTGGAGATATTTGATGCTGAGGTTTCACTGTGGAACTTTTCAATTTGA 651 0.5745 MEIFTSTHDHDSEASCETGSPTRVQSSGCSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNSRIWLGTYRTPEMAARAHDVAALALRGKSACLNFADSVWRLTVPDTTDAEEIRRAAVEAAEAFVAEDVNQQRRSEEIEEPLRLQQEEAMSEDEELHELLMRIANEPLMSPPPCVRDGSGWNDVEIFDAEVSLWNFSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1585 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 216 - -
Pvu2g1585 216 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Pvu2g1585 216 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Pvu2g1585 216 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Pvu2g1585 216 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Pvu2g1585 216 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Pvu2g1585 216 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Pvu2g1585 216 MobiDBLite consensus disorder prediction 1 16 - -
Pvu2g1585 216 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Pvu2g1585 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 216 IPR045277 GO:0003700
Pvu2g1585 216 MobiDBLite consensus disorder prediction 1 29 - -
Pvu2g1585 216 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1585 Pvu-Chr2 29528341 29528991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1585 31 214 AP2-EREBP Transcription Factor Family AT1G63030 51.596 2.36e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu2g1585 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1585 - - gmx:100789097 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1585 2 29528341 29528991 Pvu2g1585 2 29528341 29528991 ECH
Pvu3g2194 3 42804542 42805711 Pvu2g1585 2 29528341 29528991 PCT