Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1575 ATGCCTTCAACTCTTCAACCTTCTACCTTGTTGTTTGCTTTTACAATGAAGTTCATGTTCATTCTCATGTTCATGGGAGACAAAGCAATAGCTGCGGGGATATTTCGACCCAGTCAATGGGCTCTTGCTCATGCCACCTTTTACGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGGTACGGGAATTTATTTCAAAATGGTTACGGCACAGATACTGTGGCTTTAAGTTCTACGTTGTTCAACAATGGATATGCGTGTGGAACTTGTTATCAAATAAAATGTTACCAATCAAGTGCGTGTTATAAGAATGTAGCTTTTACCACAGTGACTGCCACCAATCTTTGCCCTCCTAACTGGGCACAACCCTCAAATAACGGAGGCTGGTGCAACCCACCACGAGTGCATTTTGACATGGCCAAACCCGCTTTCATGAAAATTGCGCAGTGGAAAGCTGGCATCGTCCCTGTTATGTACCGCAGAGTGCCATGTGTAAGGAAGGGAGGGCTGCGATTCACTTTTCAAGGAAATGGGTACTGGCTTTTGGTGTACATGATGAACGTGGGAGGTGGAGGAGATATTTCAAGCATGTCGGTGAAAGGAAGCAGAACTGGGTGGATCAGCATGAGCCACAACTGGGGTGCTTCATATCAAGCATTTGCAACTCTTGGTGGCCAACCTCTTTCTTTCAGGATTACTTCATACACCACCAAGGAAACTATCATTGCATGGAATGTTGCTCCTTCAAACTGGAACGTGGGACTAACTTATTCCACCTCTGTTAACTTCCGCTGA 801 0.4582 MPSTLQPSTLLFAFTMKFMFILMFMGDKAIAAGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTVALSSTLFNNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWAQPSNNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVPCVRKGGLRFTFQGNGYWLLVYMMNVGGGGDISSMSVKGSRTGWISMSHNWGASYQAFATLGGQPLSFRITSYTTKETIIAWNVAPSNWNVGLTYSTSVNFR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1575 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Pvu2g1575 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Pvu2g1575 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Pvu2g1575 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Pvu2g1575 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Pvu2g1575 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Pvu2g1575 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Pvu2g1575 266 SMART dpbb_1 75 161 IPR007112 -
Pvu2g1575 266 PANTHER EXPANSIN 4 265 - -
Pvu2g1575 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Pvu2g1575 266 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Pvu2g1575 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Pvu2g1575 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Pvu2g1575 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Pvu2g1575 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Pvu2g1575 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Pvu2g1575 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Pvu2g1575 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Pvu2g1575 266 Gene3D - 172 266 IPR036749 -
Pvu2g1575 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Pvu2g1575 266 Gene3D - 28 166 IPR036908 -
Pvu2g1575 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Pvu2g1575 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Pvu2g1575 266 PANTHER EXPANSIN-A15 4 265 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1575 Pvu-Chr2 29369190 29370828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1575 5 266 Expansin Gene Family AT1G12560 65.779 1.54e-128 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1575 - - gmx:100807807 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1575 2 29369190 29370828 Pvu2g1575 2 29369190 29370828 ECH
Pvu3g2204 3 42940817 42942083 Pvu2g1575 2 29369190 29370828 PCT