Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1562 ATGGATCCTCTAACAACACACGGCCATTCGCTTCCACCTCCTTTCCACGCAGGAAGGGATCTCCACCTGCACCACCAACACCAGTTTCACTCCTTACAACAGAACACGGAAGACGAACAAAGCGGAAGCAGCGGAGGCCTAAACATGGCTCACAAAAGAGAACGTGAAGAAAACAGAACCACCAACAGCAACAACAGTGACGGAAAGGAAGGAGGAGGTGGTGGCTCCGGCGAAACCGAGATGTCGAGAAGACCTCGCGGAAGACCCGCGGGATCCAAGAACAAGCCCAAACCCCCAATCATCATCACGCGCGACAGCGCCAACGCGCTCAAAACTCACGTCATGGAAGTCGCCGACGGCTGTGATATCGTCGACAGCGTCTCCACCTTCGCCCGCCGTCGCCAGCGAGGCGTTTGCATCATGAGCGGAACCGGAACCGTCACCAATGTCACCCTGCGCCAGCCCGCTTCTTCCGGCGCCGTGGTCACGCTCCACGGAAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTCCCGCCTCCTGCGCCGCCCGCCGCCACCGGTTTGACGATATACCTAGCTGGAGGACAGGGGCAGGTAGTAGGAGGAAGCGTGGTTGGCGCACTCGTTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTCAGCAACGCTGCGTATGAGAGACTTCCGTTGGAAGATGAAGACCCTTCGATGCCGCTTCAGGGAGGTTCGATTGGGTCACCCGGCGGTGGTGGCGGCGTTGGTCAACCGCAGACACCTCAGCAGCTTCTGGGGGATTCCACTGCTCCTCTTTTTCACGGTTTGAATCCGAATCTTCTGAATTCCGTTCAGATGCCTTCGGAAACGTTCTGGGCAACGGGTCGCTCTCCTTACTGA 900 0.5811 MDPLTTHGHSLPPPFHAGRDLHLHHQHQFHSLQQNTEDEQSGSSGGLNMAHKREREENRTTNSNNSDGKEGGGGGSGETEMSRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSTFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGALVASGPVVIMSASFSNAAYERLPLEDEDPSMPLQGGSIGSPGGGGGVGQPQTPQQLLGDSTAPLFHGLNPNLLNSVQMPSETFWATGRSPY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1562 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 224 IPR005175 -
Pvu2g1562 299 CDD DUF296 111 194 IPR005175 -
Pvu2g1562 299 MobiDBLite consensus disorder prediction 49 63 - -
Pvu2g1562 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 236 - -
Pvu2g1562 299 MobiDBLite consensus disorder prediction 27 101 - -
Pvu2g1562 299 Gene3D - 110 238 - -
Pvu2g1562 299 PIRSF ESCAROLA 18 298 IPR014476 GO:0003680
Pvu2g1562 299 ProSiteProfiles PPC domain profile profile. 107 244 IPR005175 -
Pvu2g1562 299 MobiDBLite consensus disorder prediction 234 267 - -
Pvu2g1562 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 299 - -
Pvu2g1562 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 299 IPR014476 GO:0003680
Pvu2g1562 299 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1562 Pvu-Chr2 29246342 29248011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1562 1 299 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 56.509 1.99e-84 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1562 - - gmx:100781436 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1562 2 29246342 29248011 Pvu2g1562 2 29246342 29248011 ECH