Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1546 ATGGTCCACAACAGTATACACACTCCTCTCAAGCTCCCACCGTTATCCCAACCCCATCTTCCTCCTCCCACGCGCTTCACCGCCATGTCTCTTCTACTCGCTCGCACCCCACTTTCTTCATTTCCTCCAATCCCTCACCACCACTTCAACAACAACCTTCTAATCGCACCCTCTCAGAAGCGCTTCCCTCTCACTGCAGGGCCAATTCTTCTCTTTACTCCCCGCCGCATTCTAGCATCACACCCTCTGAAGTGTGCCTCCATCAACGGAGTCTCCGTTCATAACAATCATCAAGCTTCCAGCGAACAAGTCTACGCCGCTGACTTACTTGAGAGGATTCGTAAATGGCTCGACTTTTTACCGTCGATTCTTCCCGGCGGACGTTGGTGGGACTTCTCCGAGGACGTCGACGTTCAGCTGGTGACGCAGCCGGTGACCGTGTGGCGCGCGCTAGGCAAAATGTGGGAGCTTGTCGCGCGTGACAGATGGGTCATCTTCGCTGCTTTCTCTGCTCTCATTGTTGCTGCAGTTTCGGAGATTTCTATTCCGCATTTTTTGACGGCGTCCATCTTCTCGGCACAGGCTGCGGACATTACTGTTTTTCATCGGAATGTGCGCGTGTTGGTTCTGTTGTGTGTGACTTCGGGAATATGCAGTGGGCTACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACGCTATACAATTCTCTTCTACTGCAGGATATATCGTTTTTTGACAATGAAACGGTTGGTGATTTGACAAGTAGGCTTGGGGCTGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAACTTTCTTCAGGGTGGAGGTTCATTAATCTACTTGTTGATTTTATCCTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGCTATGGAAGTTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAACATGGAAGGTATAAATGGTGGCTGGGGAAATTAGCTGACATCAGCTTGCGACAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAACATCCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGCGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATTCTATACAGTGAATGGTTAATCTACTCTACCTGGTGGGTCGGAGATAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTTCATTTGATGGATCTCTCCCCTAGTAGCCAATTCATAGAAAGAGGTATAAAGTTGCAGAGGTTAATGGGGCGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTAAGCTTTGTTGTCCATCCTGGTGAGGTTGTTGCAATAGTTGGACTTAGCGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAATGGTCAGATTTTGGTAGATGATGTCCCTATTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTAGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCCCATGACTTTATCTCAGCACTTCCCAATGGTTATGAGACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAGTATTGATCCTTGATGAAGCCACTAGTGCGCTTGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGATCTGTGAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTTGAGATTGGAAGTCACAGGGAGCTTCTCTTAAAAGATGGTTTGTATGCACGGCTAACTAGGAAACAGGCTGATGCCATGGCATGA 2175 0.451 MVHNSIHTPLKLPPLSQPHLPPPTRFTAMSLLLARTPLSSFPPIPHHHFNNNLLIAPSQKRFPLTAGPILLFTPRRILASHPLKCASINGVSVHNNHQASSEQVYAADLLERIRKWLDFLPSILPGGRWWDFSEDVDVQLVTQPVTVWRALGKMWELVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQAADITVFHRNVRVLVLLCVTSGICSGLRGCCFGIANMILVKRMRETLYNSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNFLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGSYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEHGRYKWWLGKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFIERGIKLQRLMGRIEFLNVSFHYPSRPTVSVVQHVSFVVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILVDDVPIKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKVLILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGQIVEIGSHRELLLKDGLYARLTRKQADAMA* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1546 724 SMART AAA_5 508 695 IPR003593 -
Pvu2g1546 724 Pfam ABC transporter 500 646 IPR003439 GO:0005524
Pvu2g1546 724 CDD ABC_MTABC3_MDL1_MDL2 481 719 - -
Pvu2g1546 724 ProSitePatterns ABC transporters family signature. 618 632 IPR017871 GO:0005524
Pvu2g1546 724 Pfam ABC transporter transmembrane region 167 432 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g1546 724 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 481 718 IPR003439 GO:0005524
Pvu2g1546 724 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 166 447 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g1546 724 CDD ABC_6TM_TAP 168 455 - -
Pvu2g1546 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 719 IPR027417 -
Pvu2g1546 724 Gene3D - 471 723 IPR027417 -
Pvu2g1546 724 SUPERFAMILY ABC transporter transmembrane region 153 463 IPR036640 GO:0005524|GO:0016021
Pvu2g1546 724 Gene3D ABC transporter type 1, transmembrane domain 148 467 IPR036640 GO:0005524|GO:0016021
Pvu2g1546 724 PIRSF ABC_prm/ATPase_B 75 724 - -
Pvu2g1546 724 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 105 723 - -
Pvu2g1546 724 PANTHER ABC TRANSPORTER B FAMILY 105 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1546 Pvu-Chr2 29048167 29058947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1546 236 722 Calmodulin-binding Proteins AT2G36910 34.200 3.45e-73 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1546 - - vra:106777591 1306.2