Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1534 ATGGAATTCGAGGATCAAGAGGACCAAGAGGAGGAGCAGTGTATGAGTGCCGCAGCTTTCGACCCCACCCGGATGAAGCTTCCGCTCGGCCCGGAGGCCGTCATGGCGGCGCAGCCAGTCAGAACCAGCACCAACGACCACGCTGTCGGCATCGGGGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGGACGGAGGGTTCCCTCGACGCCCTCAAATGTGCCGCCTGCAGCTGCCACCGCAACTTTCACCGCAAGGAGAGCGACGGGGCCGGCGCCTCCGTCGGCGGTGTCGACCCGTTCTTGGTTTCGCACCACCACCTGCACCACCCTCCGCCGCCGCAGTTCGCGGCGTACTACCGGACCCCGACTGGGTACCTTCAGGTGGGGGGGCAGGCACGCGTGACTGGGACGCTAGCGCTGCCGTCGACGTCCGGCGGCGGCGGGACGCAGAGCACTCGGGAGGACCAGGAGGACGTTTCGAACCCGAGTGCAGGAGGAACGGGGTCCAAGAAACGGTTCAGAACAAAGTTCACGCAGGAGCAAAAGGACAAAATGCTTGAACTTGCTGAAAAACTAGGGTGGAGGATTCAGAAACACGACGAGGGTGTGGTCCAAGCTTTCTGCAACGAAACCGGGGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 711 0.6273 MEFEDQEDQEEEQCMSAAAFDPTRMKLPLGPEAVMAAQPVRTSTNDHAVGIGGHALDGCGEFMAAGTEGSLDALKCAACSCHRNFHRKESDGAGASVGGVDPFLVSHHHLHHPPPPQFAAYYRTPTGYLQVGGQARVTGTLALPSTSGGGGTQSTREDQEDVSNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEGVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1534 236 Pfam ZF-HD protein dimerisation region 46 90 IPR006456 -
Pvu2g1534 236 MobiDBLite consensus disorder prediction 140 177 - -
Pvu2g1534 236 MobiDBLite consensus disorder prediction 140 171 - -
Pvu2g1534 236 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 173 229 IPR006455 -
Pvu2g1534 236 SUPERFAMILY Homeodomain-like 161 234 IPR009057 -
Pvu2g1534 236 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 40 89 IPR006456 -
Pvu2g1534 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 45 235 - -
Pvu2g1534 236 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 45 89 IPR006456 -
Pvu2g1534 236 Gene3D - 157 234 - -
Pvu2g1534 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1534 Pvu-Chr2 28808014 28808762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1534 41 232 ZF-HD Transcription Factor Family AT4G24660 51.042 4.12e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu2g1534 ZF-HD_dimer 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1534 - - gmx:100808910 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1534 2 28808014 28808762 Pvu3g2982 3 51554631 51555290 PCT