Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1525 ATGCAACCGTTTCGAAGTTTCTATAACTCAGAAGCTCAAATGATAAGAGGTGGCTTTCCTCAGCCATTCATCTCTAGGACATACAAAACCAGTTTCTTGAAGAAAAGATCAAATGCAGAGATCAAAGTTGTAGCCGCAAAAAAACACAGTGAAGCTGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAACTATCCTCCCCAACTTGATCAAACATGGTGAATTAGATTGTGTTATGAACCAACAGAAGGACAAGGCATCAGTGTTGGCAGAGACTATAAAGCAAGTGAAGGAGCTGAAGAGAAAGGTATCGAAACTGGAACAGGATAGTTGTGGTAACTCATCAAAGGATGTTGTTAAGTTTCCTAGTGGGGCAGACAGGTTGAACTTGGAAAGATGTAATGATGAGGAGGGCGTAGTGAAGGCCACATTGAGTTGCGAGGAGAGTTTGGGACTGATGTCTGCAATATCAAGGGCAGTAGGGTCAGTGAAAACCAAAGTGGTAAAGGCTGAGATAGTGAGTGTGGGTGGGAGAAACAGAAGTGTGTTGTGGGTCAAAGGTCTTGGAAAAGATCGTATGGGAATGCTCAAGAGCTCTTTGAAGATTGCCATGCACAAGCCAGCCTTTAAGATGCGCCGTTCTACTCACTAA 666 0.4324 MQPFRSFYNSEAQMIRGGFPQPFISRTYKTSFLKKRSNAEIKVVAAKKHSEAEKRRRMRINGQYETLRTILPNLIKHGELDCVMNQQKDKASVLAETIKQVKELKRKVSKLEQDSCGNSSKDVVKFPSGADRLNLERCNDEEGVVKATLSCEESLGLMSAISRAVGSVKTKVVKAEIVSVGGRNRSVLWVKGLGKDRMGMLKSSLKIAMHKPAFKMRRSTH* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1525 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 104 IPR011598 GO:0046983
Pvu2g1525 221 SMART finulus 50 110 IPR011598 GO:0046983
Pvu2g1525 221 PANTHER TRANSCRIPTION FACTOR BHLH131 5 216 - -
Pvu2g1525 221 Gene3D - 44 122 IPR036638 GO:0046983
Pvu2g1525 221 Coils Coil 94 114 - -
Pvu2g1525 221 Pfam Helix-loop-helix DNA-binding domain 48 104 IPR011598 GO:0046983
Pvu2g1525 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 113 IPR036638 GO:0046983
Pvu2g1525 221 PANTHER TRANSCRIPTION FACTOR BHLH30 5 216 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1525 Pvu-Chr2 28640678 28641689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1525 43 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 39.073 1.67e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g1525 HLH 5.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1525 - - gmx:102667782 306.219