Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1494 ATGTCACCCGATGACATACCACCTTCAAAGCCAGCCACAACAGCAACAACAGACCAAGAGACTCAAAGTTCAGGTGGCAGAAAAGGGTCCTCCACAAGGCCCCAAGAGCAAGGCCTCAAGTGTCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCGTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTGAGGTCATCAAGGCTTTCATGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTTGTTGGTGGCCTCAAGTTCCTTCATGCTCTTCCTCCTTCCATGGACTTTCACCTTGGGGGGTTACCCTTCCCTAGGCTTCATCATCACCCTCCAGCAACTTATAACCAATTTTCCTCTTTTGGGGACACTTCTAGTGCTTCTTCCTGTTTCAACCTTGACCCTTCTCCTGGCACCACCCCAAGTTCTTTCGCTGCTCTTAATTACCCCTTCTCTTACAATGGTGCAATCCAAGGTATGAGCGCTATGAATGTTCACAGTGGTCACGCTTCTTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTACAGCAGCAGCGATTGGCAATGCTGTTTGGTGGAGATAACAACCAGAAAGATCATAGTGGTAGTGGTGGGGTGTCATCAGCGGCTAACCATCTTGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCAAAATCTGGAGGTCTCAAAGGCAGGGATTTTCCCTGTTGAGAACTGTAGAAAAGAACATGGTCCAAGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTACTCCTACTGCTACTACTACCAGTAGTGGTGGCCCACGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTCAATGCTTGGGGCGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1035 0.4908 MSPDDIPPSKPATTATTDQETQSSGGRKGSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLVGGLKFLHALPPSMDFHLGGLPFPRLHHHPPATYNQFSSFGDTSSASSCFNLDPSPGTTPSSFAALNYPFSYNGAIQGMSAMNVHSGHASSIESLSSINQDLHWKLQQQRLAMLFGGDNNQKDHSGSGGVSSAANHLENQTQKPQPILFQNLEVSKAGIFPVENCRKEHGPSGDTHTPSTEWFFGNSYASVTPTPTATTTSSGGPRNDNASNWSSGVNAWGDVPQQYTALP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1494 344 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Pvu2g1494 344 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 20 344 - -
Pvu2g1494 344 MobiDBLite consensus disorder prediction 1 41 - -
Pvu2g1494 344 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Pvu2g1494 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 344 IPR045174 GO:0003700|GO:0006355
Pvu2g1494 344 MobiDBLite consensus disorder prediction 7 37 - -
Pvu2g1494 344 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Pvu2g1494 344 MobiDBLite consensus disorder prediction 288 335 - -
Pvu2g1494 344 MobiDBLite consensus disorder prediction 280 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1494 Pvu-Chr2 28149833 28151588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1494 30 344 C2C2-Dof Transcription Factor Family AT5G65590 39.752 3.77e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu2g1494 zf-Dof 1.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1494 2 28149833 28151588 Pvu3g2961 3 51349107 51350494 PCT