Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1489 ATGATGGTGGAAACTCATATGAGGAAACAAGTTCCTCTCCAATGGTGGTTTAGAATGGCTGTGCTTCTTAGCTTAATCTTTTTCGGTGCCTGCTCGGACTCTTCTGAGAGTGTCTCATTTAGAAAAGGTTTGAAGACTGCTCCTCCTCCTTCTCCTGTCAAGCTGAATACCAACAATTTTACGCAGGTAGTGATTGACAACGGCATAGTTTCCCTCAATTTGTCAAAACCTGGAGGCTATATCATTGGACTATACTATGACGGAGCTACGAATATCCTTTCTCAAAAAAATAATGAAAATGATAGAGGGTACTTGGACGTTGTTTGGAACGGAGCAGGAAAACCTTCGTTTTTTGAGAGAATCCATGGGACAAATTTTTCAGTCATCGAAGAAAGCGATACATTGGTGGAGGTTTCATTTCTAAAAACATGGACTGCTTCCCTGGAAGGCTCAAGTGTCCCCATAAACATAGACATAAGGTATATATTGCGAAGTGGCGATTCTGGGTTTTATTCATACGCAATATTCACTCGTCCACCAGGATTTCCTGCAGTTACTGTGTATCAAGTTAGAATTGTTTACAAACTCGATGATGGCAGGTTCCACTATATGGCCATATCTGATACCAGGCAAAGGAAGATGCCAACTGCAGAAGATAGAATAACGGGGCAGGTCCTGGCTTATCCTGAAGCTGTTCTCTTAACCAAAGCAACTGACCCACAGATTCGAGGAGAGGTTGATGATAAATACCAATACTCGAGTGAGAACAAAGATAACTCTGTTCATGGGTGGATTACAGAGGACGATTCAGCACCCGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGCTGGGCCCACTAAGCAAGATCTCACTTCTCATGTTGGCCCAGTTTCTCTTTCCATGTTTACTAGCACTCATTATGGTGGCAAGAAGGTAATCATGGACTTTGCTAAAGGGGAGGCTTATAAAAAGGTTTTTGGGCCAATTTTTGTTTACCTCAACTCTTTTCCAATCAAAACTCCGTTCAAGTCTCTGTGGTCAGATGCTGTACAACAGTTATCCAATGAAGAAAAAAAATGGCCTTATGATTTCATTGGATCAAAAGATTTCTTTCCACCCAATCAACGGGGAACGTTGTCAGGAAGACTTCAAGTTAAAGATGGGGGAGGGGTGGCTCAACCAGCTAAAAGTTCTTACATTGGTCTAGCTTTACCTGGAGATGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGAAGTACAACTTGTATGCATGGGTCCCTGGTTTCATAGGAGATTTTAAATATCAAATTAATGTTATCAAACCAGGAGACAATATCCACTTGGGTACACTTGTATTCAATCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATAGGTCAGCTGCGGAGTTCTATGTACCAGACCCTAACCCAAAGCTCGTGAACAGATTATACCTAAACGATAGCATAAACAGGTTTAGGCAATACGGCTTGTGGGCACGTTACACTGATTTGTATCCGAAAAATGATCTCATTTTCACAGTCGGTGTTTCTGACTATCACAAGGATTGGTTTTATGCTCAAGTTACCAGGAGCATAGGAGAAAGCCAATTCGTGGCAACCACATGGCAGATTCAATTCCAGCTTGAAAATATCATAAAGGGAGGAAACTACACACTGCAATTGGCCCTGGCATCCGCCAGTAATTCCCAATTGGAGGTTAGGTTCAACAAACCGAAAGAAAACCCTCCATACTTCTCAACAGAACCGCAAATTGGCGATGACAATGCTATAGCAAGGCACGGCATCCATGGATTGTATAAGTTGTATACTGTAGCTGTAAATAGTAATCAACTGGTAAAAGGAAATAACATCATCTATTTGACACAGTCAATAGTCAAAGGTCTATTTGAAGGAGTTATGTATGATTATATCCGATTAGAAAGTCCTCCAACGACTTCTAAACAAACTTAA 2058 0.4145 MMVETHMRKQVPLQWWFRMAVLLSLIFFGACSDSSESVSFRKGLKTAPPPSPVKLNTNNFTQVVIDNGIVSLNLSKPGGYIIGLYYDGATNILSQKNNENDRGYLDVVWNGAGKPSFFERIHGTNFSVIEESDTLVEVSFLKTWTASLEGSSVPINIDIRYILRSGDSGFYSYAIFTRPPGFPAVTVYQVRIVYKLDDGRFHYMAISDTRQRKMPTAEDRITGQVLAYPEAVLLTKATDPQIRGEVDDKYQYSSENKDNSVHGWITEDDSAPVGFWVITPSNEFRNAGPTKQDLTSHVGPVSLSMFTSTHYGGKKVIMDFAKGEAYKKVFGPIFVYLNSFPIKTPFKSLWSDAVQQLSNEEKKWPYDFIGSKDFFPPNQRGTLSGRLQVKDGGGVAQPAKSSYIGLALPGDEGSWQTESKGYQFWTQTDKDGSFSITNIVPGKYNLYAWVPGFIGDFKYQINVIKPGDNIHLGTLVFNPPRNGPTLWEIGIPDRSAAEFYVPDPNPKLVNRLYLNDSINRFRQYGLWARYTDLYPKNDLIFTVGVSDYHKDWFYAQVTRSIGESQFVATTWQIQFQLENIIKGGNYTLQLALASASNSQLEVRFNKPKENPPYFSTEPQIGDDNAIARHGIHGLYKLYTVAVNSNQLVKGNNIIYLTQSIVKGLFEGVMYDYIRLESPPTTSKQT* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1489 685 CDD RGL4_C 487 676 - -
Pvu2g1489 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 680 - -
Pvu2g1489 685 Gene3D - 376 470 - -
Pvu2g1489 685 Pfam Polysaccharide lyase family 4, domain II 401 463 IPR029413 -
Pvu2g1489 685 Pfam Rhamnogalacturonate lyase family 52 246 IPR010325 -
Pvu2g1489 685 SUPERFAMILY Galactose mutarotase-like 57 342 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pvu2g1489 685 CDD RGL4_M 379 475 IPR029413 -
Pvu2g1489 685 Pfam Polysaccharide lyase family 4, domain III 485 675 IPR029411 -
Pvu2g1489 685 Gene3D - 483 676 - -
Pvu2g1489 685 Gene3D - 55 327 IPR014718 GO:0030246
Pvu2g1489 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 680 - -
Pvu2g1489 685 CDD RGL4_N 56 339 - -
Pvu2g1489 685 SUPERFAMILY Galactose-binding domain-like 482 676 IPR008979 -
Pvu2g1489 685 SUPERFAMILY Starch-binding domain-like 375 468 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1489 Pvu-Chr2 28069465 28075642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1489 63 678 Polysaccharide Lyase AT1G09880 54.054 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1489 K18195 - gmx:100781089 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1489 2 28069465 28075642 Pvu3g2957 3 51313075 51318258 PCT