Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1483 ATGGGAAGGGGCAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCACAAGTTGGCCTTCTGATATTCTCCAGCACGGGGAAGCTTTACGAGTATGCCAGCACCAGGTTTGATCACCATCACCTTTTTTAA 207 0.4638 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTRFDHHHLF* 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1483 68 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 63 - -
Pvu2g1483 68 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g1483 68 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g1483 68 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g1483 68 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Pvu2g1483 68 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu2g1483 68 Gene3D - 13 66 IPR036879 GO:0003677|GO:0046983
Pvu2g1483 68 CDD MADS_MEF2_like 2 63 IPR033896 GO:0000977|GO:0045944
Pvu2g1483 68 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu2g1483 68 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 1 63 - -
Pvu2g1483 68 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g1483 68 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1483 Pvu-Chr2 27992631 27993350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1483 1 60 MADS-box Gene Family AT4G37940 88.333 5.83e-34 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g1483 SRF-TF 2.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1483 K09264 - pvu:PHAVU_002G143900g 137.117