Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1471 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTGCTTGCTCCAAGAAAAGACACTTGGGGTGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTTGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAGGGTTTAGCCACTTTGAATCCCTCATTTGCTGCATTTTCAACACCACTAGACCACAGGTTTGAATGTCCTTATGGAAGTGAAGCAGCCTACCCTTTTGTTGATGAGTTCACATTGCCAGAGCTTGATTCATCATACACCATAAATGATGAGTCGGCACCACTTTTGCCAAAAGAAGATAACCCATCATTGGAGGATGAAGAGCTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAACAAGCAAAAAATGGCTGCAAAATTGAGGAACAAGTGACAGAGATTCCAGTCTTCAACATGGGTTTGTGTGCAGAGAAAAAGCTCAAATCCAAAAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATTAGCAAGATGGACAGGACCTCCATTCTCGGAGACACTATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAACGGAGGAGGGAACAAATCAGATAAACCTCTTGGGCATTTGTAAGGAGCTAAAGCCAAATGAAGTAATGTTTGATGTTGAGAGAAGAGAGCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCAGGATTACTCCTGTCCACAGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCATCAGTGTGTCATAACCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCTGAGGCAGCTGAGCAGAGAAATTGTACGGGCCCGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTGTAG 978 0.4387 MELSQLGFLDELLAPRKDTWGALSTGLNELLPCGWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYGSEAAYPFVDEFTLPELDSSYTINDESAPLLPKEDNPSLEDEELGFLGSDNQSLEQAKNGCKIEEQVTEIPVFNMGLCAEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEETEEGTNQINLLGICKELKPNEVMFDVERREQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVITSFNDFSMQASCSEAAEQRNCTGPEEIKQALFRNAGYGGRCL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1471 325 Gene3D - 166 238 IPR036638 GO:0046983
Pvu2g1471 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 325 - -
Pvu2g1471 325 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Pvu2g1471 325 CDD ACT_UUR-ACR-like 251 292 - -
Pvu2g1471 325 PANTHER - 2 325 - -
Pvu2g1471 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 220 IPR036638 GO:0046983
Pvu2g1471 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Pvu2g1471 325 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1471 Pvu-Chr2 27857684 27859544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1471 149 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.978 2.07e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g1471 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1471 - - gmx:100806571 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1471 2 27857684 27859544 Pvu3g2949 3 51258350 51260673 PCT