Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1468 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGACGGGCTGAGCAAGGTGTCGTCTACCTTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCTTCTACTGTGCCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTGGGCCTTCCCGGATCACAGTCACCTGAAAGGGATCCGGATCTTTTCTCTTTAAGCTCAGCAAAGATTGACGAAAAGCCACTGTTCCCTTTGGGTCCTACCAAAGACGGGATTTTCTTGTCGTCCCAGAAAACTGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGCGTTTTCTCAGGGAATGACTGCAATGCTATCACCTAGGCCTTCTGGTGCTCAGCCTTCTGCAATGAAAGAAATGCCTAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATAAGTGGCAGTGCACCGGCATCTAAGGCACAGGTTGTCGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACCACATCCAACAAGAACAATGATGAAGTAGATGGAAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACATATCAGGAGCTATCTTCTGCACTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGCTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGACCTTCTGCACGGTTCAGAGTATGTCCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTGGGGGATGTACCGTGGGAAATGTTCATTGATACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAGAAGTCCAAAAGCAGGACTTAG 1053 0.4767 MSPPAVVTEEDGLSKVSSTLASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPGLGDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSSAKIDEKPLFPLGPTKDGIFLSSQKTVVSGNKRGFADTMDAFSQGMTAMLSPRPSGAQPSAMKEMPSKLQERPCSANNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRT* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1468 350 Pfam AUX/IAA family 75 341 IPR033389 -
Pvu2g1468 350 Gene3D - 226 344 - -
Pvu2g1468 350 PANTHER AUXIN-INDUCED PROTEIN 13 343 - -
Pvu2g1468 350 MobiDBLite consensus disorder prediction 1 26 - -
Pvu2g1468 350 SUPERFAMILY CAD & PB1 domains 229 331 - -
Pvu2g1468 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 343 IPR003311 GO:0005634|GO:0006355
Pvu2g1468 350 ProSiteProfiles PB1 domain profile. 230 334 IPR000270 GO:0005515
Pvu2g1468 350 MobiDBLite consensus disorder prediction 168 192 - -
Pvu2g1468 350 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1468 Pvu-Chr2 27811934 27816666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1468 232 335 B3 DNA Binding Superfamily AT5G37020 32.692 4.89e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu2g1468 AUX_IAA 7e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1468 K14484 - gmx:547502 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1468 2 27811934 27816666 Pvu2g1468 2 27811934 27816666 ECH
Pvu2g1468 2 27811934 27816666 Pvu3g2947 3 51227227 51232145 PCT