Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1458 ATGGTGACACCTGGGCGTGTCTTAACGAAAAACTCTCCGTGGGGCATTTGGGTTTCGCGGAAGGCTCGCACTTGCTCACTCTCACTAGCTTTACGTGTTTATCCCCTTTTCTCTTTCTTTTTCTCTCCAGTTCTACCTTCCAAACCAAATCAATTTCAATTCCCCAAACCCCAAAGCCCAATCACCACTCATCAATCACTAACATCAACAACTAGCGTTAGCGAGTGGATGAATCTCTGGACGGACGATAATTCCTCTGTTATGGAGGCTTTCATGTCTTCCCCCGATCTCTCATCCATATGGCCACCTCCGGCGCCGCCGCAATCCGCCGCCGTCTTCAACCAGGACACGCTCCAGCACCGCCTCCAGGCTCTCATCGAGGGCGCCAGAGAGAGCTGGACCTACGCCATCTTCTGGCAGCACTCCTACGACTATTCCGGCTCCGCTCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAAGCCAAGGCCAAGGCCAAAGCTAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAGCTCAACTCCCTCATCTCCGGCTCTTCCGCCGCTTCCTCCGACGACGTAGACGAGGAGGTAACTGACACCGAGTGGTTCTTCCTCGTCTCCATGACTCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAACTCCAACCCCGTCTGGGTCATCGGAGGCGACCGCCTCTCCACCTCCCCCTGCGAGAGAGCCCGCCAGGGACAAGTCTTCGGCCTCCAAACCCTAGTCTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGGGTCTACTGAGTTAATTTACCAGAACCCGGATCTGATGAACAAGGTCAAGGTTCTCTTCAATTTTAGCAACAACAACTTCGATATGGGTTCTTCTTGGCCTGCTACCAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCAATTAACACTGCCGCAGCTACCCCTTCTGTATCCGTTTCGGTTCCCCCTCATAACAGTACTCACGGAATTTCAAAGACGATGCAGTTGGAAAGTTCTATTCAAACCCCCGGTTCCAGTACCTTAACTGAAACCCCAAGCTCTATCCATGCTGTTCCACAGAACCAGAGCGTTTTCTCCAGAGAATTGAACTTCTCTGAGTACGGTTTTGACCCTAAGAGTGGCAACACTCACAATCAGCATTCCCTGAAGCCCGAATCTTGCGAGATTTTCAGCTTCAGCGACAGCAAGAGAACCTCTTACGGCGGCGGCGGCGGCGGTGTCAATGGTAATTCCAATTCCAATTCAAATTTCTTCTCTGGTCAATCACCGTTTGTTGCTGTTGCGGATGAGAACAACAATAACAACAACGGGAAGAGACGGTCCCCGAATTCGCGAGGCAGCAACGACGATGGAATGCTTTCGTTCACCTCTCGCGCGATTCTTCCGGCAACTAATTTGAAGTCTGCCGGCGGAGGCGATTCCGATCACTCGGATCTGGAAGCGTCGGTGGTGAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCGTTGAACCACGTTGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAATCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAGATGGACAAAGCGTCGCTTCTGGGTGACGCCATATCTTACATCACGGAGCTGAAGTCCAAGCTTCAAAACCTAGAATCAGATAAAGATGGATTGCAGAAGCAACTTGAAGGAGTGAAGAAGGAACTCGAGAAATCAAGCGACAACGTTTCTTCTAATCATACGAAACACGGGGGTAATAGTAACATTAAGTCGTCGAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATTGGGTGGGACGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCAGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTGCACCACGCCAGCGTATCGGTAGTTAACGATTTGATGATCCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTCGGCCCTGTCGGCTAAGGTTGGGGATGTACGATGA 2187 0.535 MVTPGRVLTKNSPWGIWVSRKARTCSLSLALRVYPLFSFFFSPVLPSKPNQFQFPKPQSPITTHQSLTSTTSVSEWMNLWTDDNSSVMEAFMSSPDLSSIWPPPAPPQSAAVFNQDTLQHRLQALIEGARESWTYAIFWQHSYDYSGSALLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSAASSDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVIGGDRLSTSPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTAAATPSVSVSVPPHNSTHGISKTMQLESSIQTPGSSTLTETPSSIHAVPQNQSVFSRELNFSEYGFDPKSGNTHNQHSLKPESCEIFSFSDSKRTSYGGGGGGVNGNSNSNSNFFSGQSPFVAVADENNNNNNGKRRSPNSRGSNDDGMLSFTSRAILPATNLKSAGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQNLESDKDGLQKQLEGVKKELEKSSDNVSSNHTKHGGNSNIKSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSAKVGDVR* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1458 728 Pfam Helix-loop-helix DNA-binding domain 548 593 IPR011598 GO:0046983
Pvu2g1458 728 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 544 593 IPR011598 GO:0046983
Pvu2g1458 728 Coils Coil 590 624 - -
Pvu2g1458 728 MobiDBLite consensus disorder prediction 515 554 - -
Pvu2g1458 728 MobiDBLite consensus disorder prediction 436 490 - -
Pvu2g1458 728 Gene3D - 536 625 IPR036638 GO:0046983
Pvu2g1458 728 MobiDBLite consensus disorder prediction 615 638 - -
Pvu2g1458 728 PANTHER MYC 108 724 IPR045084 GO:0003700|GO:0006355
Pvu2g1458 728 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 118 299 IPR025610 -
Pvu2g1458 728 MobiDBLite consensus disorder prediction 312 326 - -
Pvu2g1458 728 MobiDBLite consensus disorder prediction 312 331 - -
Pvu2g1458 728 MobiDBLite consensus disorder prediction 502 554 - -
Pvu2g1458 728 PANTHER TRANSCRIPTION FACTOR MYC2 108 724 - -
Pvu2g1458 728 CDD bHLH_AtAIB_like 541 617 - -
Pvu2g1458 728 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 545 615 IPR036638 GO:0046983
Pvu2g1458 728 SMART finulus 550 599 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1458 Pvu-Chr2 27615787 27618066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1458 77 725 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.479 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g1458 bHLH-MYC_N 1.6e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1458 K13422 - gmx:100790168 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1458 2 27615787 27618066 Pvu2g1458 2 27615787 27618066 ECH