Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1447 ATGGCTACTATAGAATCTGCCCTCACCCTGTTCGCACCTCAACGATTTTCGGACTATCGTTCGTCTGCAAAACCCCCTCACTCCATTAAGCTCCATGATTCCACTTCCCTTATTTTCTCTTCCAATGCCTCCTCTTTCAAAACTGCAAGACTCTGCTTACGGCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGGCCCAACCCAACCAACTGACAACCTCACCAAGCTCTACGTTGCTAACTTGTCTTGGTCTCTGTCGCCGGCTGACATCAAGGGCATATTTGCCCAATGTGGAACCGTAACAGACGTCGAGATAATAAGGAACAGAAAAGGGAGGCACATGGGATATGCCTTCGTTACTATGGATTCCGGGGAAGAGGCTCAGGTTGCTGTTGATAAATTTGACTCATCTGAGTTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGACATTCAAGAAACCTCCTCCTCCTCCTCCTCCACCTCCTCCACCTCCTCAACCTAGAGAGACACGTCATGTACTTTATGTATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGGCAAGTCTTCACCGAAAATTTCAAAACACCAGTTTCTGCTAGGGTTGTCTTTGATAGCCCTGCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTAATGTGGATGGGAAGGAGATAATGGGACGACCGCTTCGCCTAAGCTTTAGTGAAAAGAAAGATAATGAAGCTGGAAGTGAAAAAGAGGAAGACCAAATTAAAGATGCTGAAAGTGAAGATGAAGACCAAGGTTCTGTTGCTCAACCAGAAGAGTCATAA 873 0.4605 MATIESALTLFAPQRFSDYRSSAKPPHSIKLHDSTSLIFSSNASSFKTARLCLRLCSALQELPTTEKTPGPTQPTDNLTKLYVANLSWSLSPADIKGIFAQCGTVTDVEIIRNRKGRHMGYAFVTMDSGEEAQVAVDKFDSSELSGRIIRVELAKTFKKPPPPPPPPPPPPQPRETRHVLYVSNLAWKARSTHLRQVFTENFKTPVSARVVFDSPAKRSAGYGFVSFLTKEDAEAAISNVDGKEIMGRPLRLSFSEKKDNEAGSEKEEDQIKDAESEDEDQGSVAQPEES* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1447 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 251 IPR000504 GO:0003723
Pvu2g1447 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Pvu2g1447 290 MobiDBLite consensus disorder prediction 155 175 - -
Pvu2g1447 290 Gene3D - 160 272 IPR012677 -
Pvu2g1447 290 Gene3D - 56 159 IPR012677 -
Pvu2g1447 290 MobiDBLite consensus disorder prediction 248 290 - -
Pvu2g1447 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Pvu2g1447 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Pvu2g1447 290 MobiDBLite consensus disorder prediction 271 290 - -
Pvu2g1447 290 PANTHER CHLOROPLAST, PUTATIVE-RELATED 13 273 - -
Pvu2g1447 290 MobiDBLite consensus disorder prediction 250 270 - -
Pvu2g1447 290 SMART rrm1_1 179 253 IPR000504 GO:0003723
Pvu2g1447 290 SMART rrm1_1 80 152 IPR000504 GO:0003723
Pvu2g1447 290 MobiDBLite consensus disorder prediction 157 175 - -
Pvu2g1447 290 Coils Coil 257 277 - -
Pvu2g1447 290 PANTHER OS02G0815200 PROTEIN 13 273 - -
Pvu2g1447 290 SUPERFAMILY RNA-binding domain, RBD 78 259 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1447 Pvu-Chr2 27440368 27444356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1447 71 283 Eukaryotic Initiation Factors Gene Family AT1G49760 24.299 5.75e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1447 - - vra:106777856 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1447 2 27440368 27444356 Pvu2g1447 2 27440368 27444356 ECH