Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1446 ATGGCTTCTCTTGGCAACCCGAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGGTTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGCTGATGATTCAAGTCCAAATTTCTCCCCTCTAGTAATTGCAGTGATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCAGCAGAGAATCTTCAGAAAGCGAAGACCACGAAGAAAACGTTGAATTGGAAGAGGATCACAACCCTTCGCTCCACGAGCCTTGGCATACTCCAACCATTGGGTTAGATGAGGCTCTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGGCGATGGCTTGGTTGAGGTGACAGATTGCCCTGTTTGTCTCAGCGAGTTTGAAGATAATGAAAGTGTTAGACTCTTGCCTAAATGCAACCATGCTTTTCACCTCCCTTGCATTGACACCTGGCTCAAATCTCACTCCAGTTGCCCTCTATGTCGTGCCAGCGTATTCACATTCAATGCTGCAGCACTTCATGTGGCTACCCCAGTCATAGAATTGGGCAGTGAAACTTCAGAAAACCAACATGCAGATGAAAATGTTGTTGTTACTACAAGGGACGGTGATTTGGATGCTGTGGAGGGAGAAGGCACACACGGTGGAGCAGTTCCAAAGACTGCATTGCGTGCTTTAAGTGATCTAGGAAATTTGAGGGGAAGCCATAGTGTAATCGAGATTAGAGACGAAGAGTATGACTCCATTAGAAGGACAGTTTCTATGGATCATTCATTTCAAAGGGGTGGTGGTCTTTCAGTGGCTGATGTTCTCGCTTTGAATCAAGAGCATGAAGGATGTTCCAATGGGGCTGGTCCTTCAAAGGGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAAAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTACAATGAAGAGATCATTTTCTAGTGGAAGATTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTTCCTGTCTGA 1080 0.4454 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPADDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGSRESSESEDHEENVELEEDHNPSLHEPWHTPTIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLSEFEDNESVRLLPKCNHAFHLPCIDTWLKSHSSCPLCRASVFTFNAAALHVATPVIELGSETSENQHADENVVVTTRDGDLDAVEGEGTHGGAVPKTALRALSDLGNLRGSHSVIEIRDEEYDSIRRTVSMDHSFQRGGGLSVADVLALNQEHEGCSNGAGPSKGSRGESSKSSYKRRVLHCVLSPITMKRSFSSGRFSLSRNGRGRQWVLPV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1446 359 Pfam Ring finger domain 141 184 IPR001841 -
Pvu2g1446 359 MobiDBLite consensus disorder prediction 300 320 - -
Pvu2g1446 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Pvu2g1446 359 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 350 - -
Pvu2g1446 359 SMART ring_2 142 183 IPR001841 -
Pvu2g1446 359 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Pvu2g1446 359 SUPERFAMILY RING/U-box 122 189 - -
Pvu2g1446 359 CDD RING-H2_PA-TM-RING 141 184 - -
Pvu2g1446 359 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 350 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1446 Pvu-Chr2 27436057 27437346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1446 1 319 C3H Transcription Factor Family AT3G03550 43.027 2.27e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1446 - - gmx:100792267 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1446 2 27436057 27437346 Pvu2g1446 2 27436057 27437346 ECH
Pvu2g1446 2 27436057 27437346 Pvu3g2929 3 51068965 51070282 PCT