Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1442 ATGGGCAAGAAGAAACCCAAGGACCCGCAACAAGCCGACACTGTTTCATCCCCTTCCAGCATTTTCGACAAGCTATTCGGCAACGCGCCGGAACAGGGCACCGCAACCGCCGCTCTATTTTCTGACGACAACCCCTTTCGGAGAAAACCTGCTTCACTTTCCGACACAGTCAACAACGCTCAAATCCCTTACAATGGCGACGCCGAGAATCGCGATGCCGGCGACGAGAAGAAGCGGAAGAGGAACAGAGAGATAAGCCCAGCCCTTGATCCAGTTCCTGTAACCGAAGCTTTGAAGAAATCGGAGAAGAGGAAACGCGGCACCGATGAAGGAAAAGAAAGAGACCTTGATTTGGGTGCAGAAGCAATTGGGAAAAGGAAGAGGAAACGGGATGAAGTTGAAAGAGAGTGGGAGGAGAAGAGATATGGGCCGGTGGAGAAAGTTGAAAAGGAAGGGATTGAGAATAAAACTGTTGGGAACAAGAGGAAGACGTTGGATGATCCAGCTGATACGATGGTTTCAAAGGAGGGTTTTGATGACGAGGATAAGCTTCTGAGGACTGTCTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAGAAGTTTGGTGAGGTAGAGTCTGTGAGGATTCGTTCTGTTCCAATACAAGATACCAAGAAACCTAGAAAGGGAGCTATCCTCGCGAAGAAAATAAATGATGCTGCTGATAGTGTACATGCATACATTGTTTTCAAAACCGAGCAATCGGCACAGGCTTCTTTGTCACACAACATGTCACTGGTTGAAGGAAACCACATTCGTGTTGATAGGGCTTGTCCACCCCGCAAGAAACATAAAGGGGAAAGTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTGTAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAATCAAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAAGTTGAGACTTCGAGACCGAGAGTTGAGACTTTCTCATGCCAAAGCAGATGCTATCCCATCTAAAAGGCCAAACCCATCATCAACACAAGCTTCTACCCCATATAAACGGCCAAACCCATCATCAACGCAAGTTCCTACCCCTTCTAAAAGGCCAAACCCATCTTCAACACAAGCTCCTGGTACTCCTGCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCGAGCAGTATTAACAGGTCAAACAGAAAAACCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCAGATGTGCACAAGAAAACCCACGGTGGAGAAAACCCAAAAGAACGCCAGACAAAGAGGCCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAAAATGCACATGGAGAGTGGAGCACCTAAACAAGCAGGGATAAAACGCAAGTTTGATAGTCGTACTCCAGACAGTTCCCTGCGTATTAAGAAAGTAAAAAAGAACAGGTAG 1575 0.4533 MGKKKPKDPQQADTVSSPSSIFDKLFGNAPEQGTATAALFSDDNPFRRKPASLSDTVNNAQIPYNGDAENRDAGDEKKRKRNREISPALDPVPVTEALKKSEKRKRGTDEGKERDLDLGAEAIGKRKRKRDEVEREWEEKRYGPVEKVEKEGIENKTVGNKRKTLDDPADTMVSKEGFDDEDKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKSKEAAKFVVKKRKLRLRDRELRLSHAKADAIPSKRPNPSSTQASTPYKRPNPSSTQVPTPSKRPNPSSTQAPGTPAKKFSVASRSPSSSINRSNRKTNASYQGLRATKSDVHKKTHGGENPKERQTKRPSVAARKAKAKMHMESGAPKQAGIKRKFDSRTPDSSLRIKKVKKNR* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1442 524 MobiDBLite consensus disorder prediction 96 139 - -
Pvu2g1442 524 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 41 522 - -
Pvu2g1442 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 378 IPR000504 GO:0003723
Pvu2g1442 524 MobiDBLite consensus disorder prediction 1 139 - -
Pvu2g1442 524 SMART rrm1_1 187 276 IPR000504 GO:0003723
Pvu2g1442 524 SMART rrm1_1 298 374 IPR000504 GO:0003723
Pvu2g1442 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 230 IPR000504 GO:0003723
Pvu2g1442 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 371 IPR000504 GO:0003723
Pvu2g1442 524 MobiDBLite consensus disorder prediction 69 86 - -
Pvu2g1442 524 PANTHER RNA-BINDING PROTEIN 34 41 522 - -
Pvu2g1442 524 Gene3D - 292 382 IPR012677 -
Pvu2g1442 524 CDD RRM1_RBM34 186 276 IPR034220 -
Pvu2g1442 524 Gene3D - 182 286 IPR012677 -
Pvu2g1442 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 280 IPR000504 GO:0003723
Pvu2g1442 524 SUPERFAMILY RNA-binding domain, RBD 293 388 IPR035979 GO:0003676
Pvu2g1442 524 MobiDBLite consensus disorder prediction 457 518 - -
Pvu2g1442 524 MobiDBLite consensus disorder prediction 51 65 - -
Pvu2g1442 524 MobiDBLite consensus disorder prediction 384 455 - -
Pvu2g1442 524 SUPERFAMILY RNA-binding domain, RBD 179 286 IPR035979 GO:0003676
Pvu2g1442 524 MobiDBLite consensus disorder prediction 375 524 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1442 188 361 Eukaryotic Initiation Factors Gene Family AT1G71770 27.119 8.73e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1442 K14837 - gmx:100784494 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1442 2 27378752 27383790 Pvu2g1442 2 27378752 27383790 ECH