Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1438 ATGGGTAGATCACCGTGTCGTGAGGAGATTAGGGGTGTAAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTGATTGATTATATCAGTAAACACTGCCATGGCAGTTGGAGAACACTTCCAAAGCGTGCAGGGCTCAATAGATGCGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCCAATTCACTGAAGAAGATGAGAGAGTTATCATCAACCTTCATTCAGTTCTCGGAAACAAGTGGTCGAAGATTGCAGCTCATCTGCCAGGACGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATAAGGAAAAAGCTTCTAAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGCATGTCAAACTTGAGCAGTGTTACGAGTACAACTTGGGGCAGTAACCATCTTGGTTTACAACCAGATATCACTCAGCTAGCCAAAATACAACTGCTGCAAAATCTTTTGCAACTTATGAACAACAATTCATTTGTTAACATGGGTAACCCTTACCTCTTAGGCAATCTCAACCCTTCATTTCTGAACGGCACAAACCCCCTCCAAACTAAGGAGCCTGTGGTGTTGAGTGGTAGTGAAAGATTTGTTAACCCTAGTGTGTACTCTCAAGCACAAAGTGAGTGCTCTCAGCAGCAGGATGTTTCAAAATCATTGGCAGATGCGGAGGGTGGATCCGTTCCACAGGATCTTGATTACAACAAAATTAGCAGCACTAATCATTCACGTGAAAATCAAGAAGAAAACCCTCTTCCTGCATTAGTTTCTGCCTCCCCGAGGATGGGAACCTTCAACCAAATGGACAGTTGTGGTAACTTAGCACAAACGAGCACAGAGTCACCTTCCAACACATTCTTTGATGATTGGGAGAAGTTGCTTGATGATGAAAGAAGCGATTCCTATTGGAAAGAGATTCTAGACTTTACATCCACTTCTGCGTCACCGATTATGTGGTAG 1044 0.4339 MGRSPCREEIRGVKKGPWTPEEDEKLIDYISKHCHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGQFTEEDERVIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSVTSTTWGSNHLGLQPDITQLAKIQLLQNLLQLMNNNSFVNMGNPYLLGNLNPSFLNGTNPLQTKEPVVLSGSERFVNPSVYSQAQSECSQQQDVSKSLADAEGGSVPQDLDYNKISSTNHSRENQEENPLPALVSASPRMGTFNQMDSCGNLAQTSTESPSNTFFDDWEKLLDDERSDSYWKEILDFTSTSASPIMW* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1438 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu2g1438 347 CDD SANT 71 113 IPR001005 -
Pvu2g1438 347 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pvu2g1438 347 Gene3D - 13 68 - -
Pvu2g1438 347 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pvu2g1438 347 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pvu2g1438 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 337 - -
Pvu2g1438 347 SMART sant 67 115 IPR001005 -
Pvu2g1438 347 SMART sant 14 64 IPR001005 -
Pvu2g1438 347 Gene3D - 70 117 - -
Pvu2g1438 347 PANTHER MYB TRANSCRIPTION FACTOR 1 337 - -
Pvu2g1438 347 MobiDBLite consensus disorder prediction 230 248 - -
Pvu2g1438 347 MobiDBLite consensus disorder prediction 230 287 - -
Pvu2g1438 347 MobiDBLite consensus disorder prediction 260 281 - -
Pvu2g1438 347 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu2g1438 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pvu2g1438 347 CDD SANT 17 62 IPR001005 -
Pvu2g1438 347 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1438 Pvu-Chr2 27324613 27326554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1438 1 336 MYB Transcription Factor Family AT5G16770 47.714 4.66e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g1438 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1438 K09422 - gmx:778082 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1438 2 27324613 27326554 Pvu3g2923 3 51013011 51014592 PCT