Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1429 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAACCCTTCTGCCACTCAGCACAATTTGGGCTTACCAAACCACCGCAGGCCCGCACGTAGGAACCGAGGCCCACACCAACCGAACTTGAAATACCGTGTCGTGAACAAGCCCGAAGCGGTTTCTTCCTCCAACTCTCACTCCGTTGAGGATGCCAACGTGGACGTTACTGTCGCATGCCTAAATCTCCATGGCGAGGACGCTGGCGGCGCCTCCGAGCTCAACATCGTTGACGGCACCGACCGTGTGGCTTGTTTCAGCAAGGTCGAGGAAGGAGGCGGCAATGATGATGATGATGATGGTGGTGGTGGTGGTGATAATGACGATATTCAGACAAGGCTTGATAAGCTGCTCTGTGAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATTGCCATCACTGCTAAGTTGAACTGTCTTAATCGACTTGAGACTGTAAGCAGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCAATATCTTCCACCGATTGTTTTGACTTGTTTATTACCTAAGTCGTACCCTAGCCACCAGCCACCAATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGTGAAGATTCTGAGACTGTGCTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGATGAGGAAATAACACTTGGGCCTTATGGCATGAACGTTGTTCAGGATGAGCATGTTGTTTCAGGTGCTGAATGCATTGATATGGATATTCCTTTTTTACGAAATTACAATGATCAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATACAGGTTCTGAGTTTATCCGGTTACCATGTATGCATTTTTTTTGCCTCAAGTGTTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTCTAAAGCACTTGCTAGATGACAAAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCTTCAATGTCTGATATTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGCTTTTGTACCCTTTGCAGGGAACGGCGACATGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGGGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAGGGTTGTAACAAAATGAAATGTGGTAACTGTGAACAATACTTCTGTTACCGCTGCAACAAGGCAATTGATCCATCAGATCCGTATGGTCATTTCAGGGATGGTTCATGTGAGCTGTTTCCACGAGAAATGGTTGAATCCTGGCAAGAGCGAATAAATCATCGCCAGGCAGTAGGACAATTACAGGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTCAGGCGCGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAGCATTCCGACGGATAG 1959 0.439 MRGKQQRGAEDSFFAPNPSATQHNLGLPNHRRPARRNRGPHQPNLKYRVVNKPEAVSSSNSHSVEDANVDVTVACLNLHGEDAGGASELNIVDGTDRVACFSKVEEGGGNDDDDDGGGGGDNDDIQTRLDKLLCEIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNCLNRLETVSSSSDEFLYTFKVQYLPPIVLTCLLPKSYPSHQPPIFTLSVKWLEPVKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDEHVVSGAECIDMDIPFLRNYNDQRHNENFLKELHQCNICFGEYTGSEFIRLPCMHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDKDYERWESMMLEKTLASMSDIVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVESWQERINHRQAVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSDG* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1429 652 Pfam IBR domain, a half RING-finger domain 413 471 IPR002867 -
Pvu2g1429 652 Pfam IBR domain, a half RING-finger domain 508 552 IPR002867 -
Pvu2g1429 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 428 IPR013083 -
Pvu2g1429 652 SUPERFAMILY RING/U-box 596 649 - -
Pvu2g1429 652 ProSitePatterns Zinc finger RING-type signature. 362 371 IPR017907 -
Pvu2g1429 652 SMART ibrneu5 500 565 IPR002867 -
Pvu2g1429 652 SMART ibrneu5 413 471 IPR002867 -
Pvu2g1429 652 Pfam RWD domain 151 284 IPR006575 GO:0005515
Pvu2g1429 652 SMART RWD2001b 155 290 IPR006575 GO:0005515
Pvu2g1429 652 Gene3D Ubiquitin Conjugating Enzyme 142 291 IPR016135 -
Pvu2g1429 652 MobiDBLite consensus disorder prediction 103 122 - -
Pvu2g1429 652 ProSiteProfiles Zinc finger RING-type profile. 345 393 IPR001841 -
Pvu2g1429 652 SUPERFAMILY RING/U-box 340 424 - -
Pvu2g1429 652 SMART ring_2 433 521 IPR001841 -
Pvu2g1429 652 SMART ring_2 345 392 IPR001841 -
Pvu2g1429 652 SMART ring_2 601 630 IPR001841 -
Pvu2g1429 652 Gene3D - 487 593 - -
Pvu2g1429 652 MobiDBLite consensus disorder prediction 1 46 - -
Pvu2g1429 652 SUPERFAMILY RING/U-box 504 560 - -
Pvu2g1429 652 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 133 634 - -
Pvu2g1429 652 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 133 634 IPR031127 GO:0004842|GO:0016567
Pvu2g1429 652 SUPERFAMILY UBC-like 149 284 IPR016135 -
Pvu2g1429 652 SUPERFAMILY RING/U-box 413 475 - -
Pvu2g1429 652 ProSiteProfiles RWD domain profile. 155 290 IPR006575 GO:0005515
Pvu2g1429 652 ProSiteProfiles TRIAD supradomain profile. 341 571 IPR044066 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1429 344 575 C3H Transcription Factor Family AT2G31770 26.667 2.51e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1429 K11971 - gmx:100500662 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1429 2 27149680 27155632 Pvu2g1429 2 27149680 27155632 ECH