Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu2g1427 | ATGGATAGCGGTGGGTCCGCTCCGGCGGCGCCGATTCCGAACGCCAACGCGCCGCCGCCGTTTTTGAGCAAGACTTACGACATGGTGGAAGACCCTTCCACCGACGCGATCGTGTCGTGGAGCGCCACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTCGCCAGAGACCTTTTGCCCAAGTACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGGAAGGTCGATCCAGATCGTTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGACGAAAACCTGCCCATGGTCAAAATCATCAACAGGCTCAGCAACCCCATGGACAGAGTTCATCAGTAGGGGCATGTGTTGAAGTGGGAAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTCAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAACAATGGTTCAGCGTCTTCAGGGAATGGAGCAAAGACAGCAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAACAAAATGAGAGCAATAAGCGCATAACTGAAGTCAACAAAAAGCGTAGGCTTAAGCGGGAAGGTAATGCAGAAACAGAGTGTGCTGCTAATCCAGATGGACGAATTGTTAAATATCAACCTCTGGTGAATGAAGCTGCAAAAGCCATTCTCAAGCAAATCATGAAATGGGATACTTCTCATGTAGAATCTTTTAATAAAAACCCCGATGACTACATGATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGCTGGACTTCTGGAGTTACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGGACCCAAGGGCATGTCCGCCCAACTGTTAAACCTGAAATTTCATCTGTACCACAAGCAGTAGCTTCTGAAAATGTTACAATGGATGGAGGATATGTTGCGCCTTCTATCCCTGTTTCTCGAGCAGATGTGGTGATCCCTGATCTTCCTCCAATAACACAGATGGTGACAGGAAATATTCTTGATATTCCCGAAGAAAATTATATGGCAACTGAGACGGATGAGGGATATATGGATCCTTCATTGGGCGCTGCTGGGTCATTTCCCATTGATTTTGAAGTCATTTCACCTGATAACATTGATGATTTGTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAAACACCAGTTCCAGAGGATATCGAGACCAGTATTGCCGATGTATCCAACGGGAATGAGGTCCAGCCAACGGAAAATGGATGGAACAAAACTCAACGTATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTATGA | 1473 | 0.4596 | MDSGGSAPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNKRITEVNKKRRLKREGNAETECAANPDGRIVKYQPLVNEAAKAILKQIMKWDTSHVESFNKNPDDYMIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVRPTVKPEISSVPQAVASENVTMDGGYVAPSIPVSRADVVIPDLPPITQMVTGNILDIPEENYMATETDEGYMDPSLGAAGSFPIDFEVISPDNIDDLLGNPSIWDEILQTPVPEDIETSIADVSNGNEVQPTENGWNKTQRMDHLTEQMGLLSSDTKRV* | 491 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu2g1427 | 490 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR A-1 | 10 | 476 | - | - | |
Pvu2g1427 | 490 | Coils | Coil | 139 | 166 | - | - | |
Pvu2g1427 | 490 | Pfam | HSF-type DNA-binding | 21 | 110 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu2g1427 | 490 | PRINTS | Heat shock factor (HSF) domain signature | 21 | 44 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu2g1427 | 490 | PRINTS | Heat shock factor (HSF) domain signature | 59 | 71 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu2g1427 | 490 | PRINTS | Heat shock factor (HSF) domain signature | 72 | 84 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu2g1427 | 490 | SMART | hsfneu3 | 17 | 110 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu2g1427 | 490 | ProSitePatterns | HSF-type DNA-binding domain signature. | 60 | 84 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu2g1427 | 490 | Gene3D | - | 14 | 111 | IPR036388 | - | |
Pvu2g1427 | 490 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 10 | 476 | IPR027725 | - | |
Pvu2g1427 | 490 | SUPERFAMILY | "Winged helix" DNA-binding domain | 16 | 110 | IPR036390 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu2g1427 | Pvu-Chr2 | 27124383 | 27128271 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu2g1427 | 8 | 487 | HSF | AT1G32330 | 54.435 | 1.50e-168 | 483 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Pvu2g1427 | HSF_DNA-bind | 1.8e-33 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu2g1427 | K09419 | - | gmx:100815121 | 801.971 |