Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1424 ATGAGCTTTCAGGACATCGAGGCTGGCCGGCCTTTCGCTTCCCGGCGCAACCTGATCAACGGCAAACAAGACCCTACGCATGCGGTGGCCTCCGGCGTATTTCAGATCAACACCGCCGTCTCCACGTTCCAGCGACTCGTCAACACCCTCGGAACCCCCAAGGACACGCCCGAACTCCGCGAGAAGCTGCATAAGACAAGACTGCATATTGGACAATTGGTGAAGGATACTTCGAATAAACTTAAGCAAGCTAGTGAGATTGATCACAATGCTGAAGTTAATGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGACTCAGCGTCTTGCAGCTGAGAGGGAAACAGCTTATACATCTTTTGTTCCACAAGCAGTTCTTCCATCCAGCTATACAGCTGGCGAAATAGCCATTAGTTCTGATAAGACTCCAGAAGAGCGGGCCCTTCTTGTGGAATCTAGAAGACAGGAGGTATTATTCTTAGATAATGAGATTGCATTTAATGAGGCTATCATTGAGGAAAGAGATCAAGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACAGTGATTGATGATATTGGGTCCAATATTGAGCATTCTCATGAAGCAACTGTACAAGCAAAATCTCAACTTGCCAAAGCATCAAAGACGCAAAGATCAAATTCATCTTTGACCTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTCCTTGCTGCTTAG 822 0.4513 MSFQDIEAGRPFASRRNLINGKQDPTHAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSNKLKQASEIDHNAEVNANKKIADAKLAKDFQAVLKEFQKTQRLAAERETAYTSFVPQAVLPSSYTAGEIAISSDKTPEERALLVESRRQEVLFLDNEIAFNEAIIEERDQGIQEIQQQIGEVNEIFKDLAVLVHEQGTVIDDIGSNIEHSHEATVQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1424 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Pvu2g1424 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Pvu2g1424 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Pvu2g1424 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Pvu2g1424 273 CDD SynN 28 147 IPR006011 GO:0016020
Pvu2g1424 273 Gene3D - 174 273 - -
Pvu2g1424 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Pvu2g1424 273 Pfam SNARE domain 216 268 IPR000727 -
Pvu2g1424 273 Gene3D - 20 133 - -
Pvu2g1424 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Pvu2g1424 273 SMART tSNARE_6 175 242 IPR000727 -
Pvu2g1424 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1424 Pvu-Chr2 27105821 27109316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1424 1 261 SNARE and Associated Proteins AT5G46860 75.479 5.21e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1424 - K08488 gmx:100810149 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1424 2 27105821 27109316 Pvu2g1424 2 27105821 27109316 ECH
Pvu2g1424 2 27105821 27109316 Pvu3g2916 3 50960783 50964867 PCT