Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1413 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCCACCCAGACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCATCATCATGTGGCATGAGATTGCATGGTAATGCTGATGTCTTTTCCAAACGCAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGATTCAATTCCAGAGTGTCCTGTGTATTCGCCAACAAAAGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTCTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTACACGTTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGCAGTTCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCGTCTTCTCCCATTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGTCTCTTGGAAACATTAATTCCGGGAGTAACGGAACCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGGGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTATCAAGTGATGGGGAAGATGGTGCCTTTGATGTTCTCCTGGGGAAAACAACTCTGTTTCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTTTACAAGGCTGTTCAAAAGCCTGGCGAGTTTATAATAACTTTCCCTAGGGCCTATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCTATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCTCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCTGATTTTCCCTCTTCTGATTTCTTTTCTCACAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTTCATCATTGTGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCTTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACATAGCTTATGTTGACTGCAACTGTCATGCGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTAACCTGTGGGAGCAAACACACACTTTATATGAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCATATGAGATAAGGAAGCAAACCAAAAGTGGCCAAAACATGTATGCGTATCCTTTATCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTACACAGAATCAATCTCTCTTTGTACCTTGCTCTGAAAATCAAATACCCATGGTGTCTGACGTTTCATTTTCATCAGCCACGTCCACTCTTTCTGAATCTCTTGAGAGCTTCTCTAATCCCAAAAATGCTGAAGGGCAAACTAATATCAATTTAGAAGGTATCGCTGATTTTGAGGAGTTTGGTGAAAGAATATCCAACAGTGCATGTGAATCTTCATTATCCCCTGCTGTGTGCCATGAAAGCTCGGGTAAACCACAGGGTGTTCTTCAGAGATTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATATTTAGGGTAAAGCGCCCTTCTTCTCTTAAAGCGGAGAGGAGACATATGAATGATGTCATGTCTTCGAAGCAGACTGAGCAGCAGGGACTAAAACGACTGAAGAAAGTCCTTCCTGAAGGAAAGAGTGATCAACCAATGGATTTCAGCAGAACCCATGAATCAAGTTACAAACACACTCACCCTGTTGTTAACCATAAAGGTCGTGTTGAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCTATAAGATATAAGAAGTTAGGGAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAAAGATAGGTTGTTGCAGCGACAGACATTTAGGGCACCGCCTTCCATTGAGATGGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTTTAGGCTTAGAGAGCAGATTGAATTGA 2577 0.4137 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRASSSCGMRLHGNADVFSKRKVDKFDTNDLDWTDSIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSSGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDFFSHNSIKISFVNLMRFHHCARWFLTKSRACISFSSHSHGTILCSLCKRDCYIAYVDCNCHAHPVCLRHDVDSLDLTCGSKHTLYMREDIMDMEAAAKMFEQEDGISYEIRKQTKSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHSTNNQEYSTQNQSLFVPCSENQIPMVSDVSFSSATSTLSESLESFSNPKNAEGQTNINLEGIADFEEFGERISNSACESSLSPAVCHESSGKPQGVLQRFDTKPIADESDSDSEIFRVKRPSSLKAERRHMNDVMSSKQTEQQGLKRLKKVLPEGKSDQPMDFSRTHESSYKHTHPVVNHKGRVEVSSRDRFARGNGIPISIRYKKLGNEEISMQRDHHQHRKDRLLQRQTFRAPPSIEMEPKRLKVRGPSFLGLESRLN* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1413 858 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Pvu2g1413 858 SMART JmjN_1 87 128 IPR003349 -
Pvu2g1413 858 MobiDBLite consensus disorder prediction 750 771 - -
Pvu2g1413 858 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Pvu2g1413 858 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Pvu2g1413 858 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 854 - -
Pvu2g1413 858 SMART cupin_9 232 405 IPR003347 -
Pvu2g1413 858 Gene3D Cupin 88 438 - -
Pvu2g1413 858 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Pvu2g1413 858 Pfam jmjN domain 89 121 IPR003349 -
Pvu2g1413 858 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Pvu2g1413 858 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 52 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1413 Pvu-Chr2 26967868 26974411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1413 85 423 JUMONJI Transcription Factor Family AT1G30810 35.910 7.56e-62 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu2g1413 JmjC 1.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1413 - - gmx:100798611 1493.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1413 2 26967868 26974411 Pvu2g1413 2 26967868 26974411 ECH