Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1412 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCCGACACTCTCTTCTCCTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTCCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATGCTGCGAGGGAAGGAGGAGATGGAGAGTGGGTCAGGAAGTGAACAGGTTGAAGACAAGTCAGGGAATGAACAAGAGAGTGAACAACCCACAAAGAAGAAGCGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGATAATATCATACTTAGAGCCGAGAATGAGACTCTAAAGAGCGAGAACTATCGGTTACAAGCTGCACTGCGCAACGTTATGTGTCCCAATTGTGGTGGCCAATGCATAATGGGTGCTGATCTGGGTTTGGATGAACACCAAGTTCGCATTGAAAATGCCCGCTTAAGAGAAGAGTTAGAACGTGTGTGTTGCCTGACTTCAAGGTATACTGGGCGTTCATTGCAAACAATGGCAGCAGGTCCTACTCTCATGGCCCCTTCATTGGATTTGGATATGAACATGTATCCTAGGCACTTTTCGGATTCTGTTGCTCCTTGCACAGAAATGATTCCTGTGCCAATGCTGCCTCCCGAAGCTTCACCATTTTCTGAGGGTGGAGGAGTCTTAATGGAGGAAGAAAAGTCTCTGGCCTTGGAGCTCGCGGCTTCTTCCATGGCGGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATCCGAAGCAGTGAGGGTGAAAGGGAAGTGTTAAATTTTGAAGAGCACGCAAGGATATTTCCTTGGCCTCAGAATCTCAAACACCGAAGTGAACTGAGGACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAATAGCGTCACTCTTGTTGATGCTTTCCTTGATGGTCAAAAATGGATGGAATTGTTTCCTACAATCGTGTCTCGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCTGGTCATGCAAGCGGGACTCTTCAGCTGATGTCCGCAGAATTTCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGTTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGACAGCTTTCACCAAAATTTTCACCCTTCATATCCCAGATACTGCAGGAGATCCTCTGGTTGCGTCATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCACGCAAAAGTAGAAGAGAAACCTGTGCATCAGATATTCAGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAGTGCGAGAGGGTCGCCAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGAAGCGCGAAAGAACTTGATGAAACTAGCCCAGAGAATGATAAAAACGTTTGGCCTTAACATGAGTACCTCTGGTGGTCAATCGTGGACAGCCATATCAGATTCCCCTGAAGACACAGTCAGAATCACAACTAGGAAAGTCACGGAGCCTGGCCAACCAAATGGTGTGATTCTAAGTGCTGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGAGACGAACGCCACAGATCTCAGATGGATGCTCTTTCAAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCACTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAGTCCGGAAGCTTGGTAGTATACACCACCATTGATGTGGATTCCATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCCCTTCTCCCCCAAGGCTTCACGATAGTGCCAATGCTATCATCACCCAACGTTGACACACCCATCAATGCTAACTCCTCAGAGCCTCCATCTCTCAACTCAGGTTGCCTCCTAACCATGGGGCTGCAAGTTCTCGCCAGCACAATCCCTTCTGCAAAGCTCAATCTCTCAAGTGTCACGGCCATCAACAACCACCTCTGCAACACCTTGCACCAAATTGAAGCTGCTCTTTCTAATGGCAACGAGAATGGCACCAATTTCCTTTGCACTGAACCCACCGCCAGTGCTCCTCCCAAGAGGTGA 2376 0.4756 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMKEEDGMLRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNIILRAENETLKSENYRLQAALRNVMCPNCGGQCIMGADLGLDEHQVRIENARLREELERVCCLTSRYTGRSLQTMAAGPTLMAPSLDLDMNMYPRHFSDSVAPCTEMIPVPMLPPEASPFSEGGGVLMEEEKSLALELAASSMAELVKMCQTNEPLWIRSSEGEREVLNFEEHARIFPWPQNLKHRSELRTEASRDTSVVIMNSVTLVDAFLDGQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMSAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFTIVPMLSSPNVDTPINANSSEPPSLNSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSNGNENGTNFLCTEPTASAPPKR* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1412 791 CDD START_ArGLABRA2_like 279 508 - -
Pvu2g1412 791 Pfam START domain 285 509 IPR002913 GO:0008289
Pvu2g1412 791 SMART START_1 284 509 IPR002913 GO:0008289
Pvu2g1412 791 SMART HOX_1 82 145 IPR001356 GO:0003677
Pvu2g1412 791 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Pvu2g1412 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 777 IPR042160 -
Pvu2g1412 791 Gene3D - 318 498 IPR023393 -
Pvu2g1412 791 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Pvu2g1412 791 SUPERFAMILY Bet v1-like 527 765 - -
Pvu2g1412 791 Gene3D - 69 152 - -
Pvu2g1412 791 SUPERFAMILY Bet v1-like 276 511 - -
Pvu2g1412 791 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Pvu2g1412 791 CDD homeodomain 84 142 IPR001356 GO:0003677
Pvu2g1412 791 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Pvu2g1412 791 MobiDBLite consensus disorder prediction 53 84 - -
Pvu2g1412 791 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Pvu2g1412 791 PANTHER - 60 777 - -
Pvu2g1412 791 MobiDBLite consensus disorder prediction 53 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1412 Pvu-Chr2 26942731 26948742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1412 8 770 Homeobox Transcription Factor Family AT5G46880 57.850 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g1412 START 1.2e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1412 - - gmx:100812829 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1412 2 26942731 26948742 Pvu2g1412 2 26942731 26948742 ECH
Pvu2g1412 2 26942731 26948742 Pvu7g0690 7 6042063 6048101 ECH