Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1393 ATGGGTTACGAAGACAATCCGTATCGCGACGAGGACGGTGAACCCTTGATGGACTTCGACGACGTTCAATCCGACCGCGAGCCCTCCCCGCAGCCGCGTCACCAGCTCGATGATTACGAGGACGATGTCAACGACGAGTGGCGCGGCCGGGATCGGTCGCAGACGCCGGTGTACGATAACGATGCGGCGCGCTCGAAGCCGCGGAAGAGGCTGATCAAGAAGAGCGACGCTGGGAAGCAGTCGGTGGCGCCGGAGCTCGAGGATGAGGAGGAGGAGGGGTATGTTCCTGAGGCGAGGTTTGATGAGGAAGATGGAAGGAAGAGGAAGAAGGGAAAGGAGGTTGGGAGTGGAAAGAAGGAGAAAAGGCTGAAGGGGGAACCGAGGTTCGGTAGTGGCGGTGGATCCAAATTTGGGGGTTCGAAAAAAGGTTTTGGTGGTAAGGCAGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGGGGAGATTCTGAGGATGATCACGAAGGTGTCAGAAATCTGGATGATGACAACTTTATAGATGACACTGGAGTGGAACCTGCTTATTATGGTAGTGATGAACCACGTTCACCTGGTGATGCTCCTCAGGCAGAAGAAGGTGAAGAGGATGCAGAAATGAAGGATCTTTTCAAGATAGGAAAGAAAAGGAAGAAGAATGAGAGAAGTCCTGCTGAAATAGCATTACTAGTGGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAAGAGGATGCTGACCTTAATAGACAGGGGAAACCTGCTATTAATAAACTAAAGAAGTTGACTCTTCTCACAGAAGTCCTCTCGAAGAAACAACTCCAACTAGAGTTTTTAGATCATGGAGTCTTAACTTTATTGAAGAATTGGCTTGAGCCACTCCCTGATGGAAGCTTGCCAAATATAAATATACGCACGGAAATTTTGAGGATTTTGAACGATTTTCCTATAGACCTAGAGCAGTATGACAGAAGAGAACAACTGAAAAAGAGTGGGCTTGGAAAGGTGATTATGTTTTTATCAAAATCCGATGAAGAAATCAGTGTAAATAGGAAACTAGCCAAGGAGCTGGTTGACAAGTGGAGCCGACCTATATTTAATAAGAGTACCCGATTTGAAGATATGAGAAATGTTGAAGATGATAGGGTTCCTTTTAGGAGACCATCGGTTAAAAAGCCAACTAATAAAGCTGCAGGAATATCCAGAGATAGTGATCTTGATTTGGAAATTTCACAGCCTAGGTCTGGAGAATCCTCTTCTAGGCAGCATGCTTCAAGACCCGAAGCAACCCCTCTGGATTTTGTTATTCGACCTCAGTCTAAAATTGATCCAGATGAGATTAGAGCACGGGCAAAGCAAGCTGCCCAAGATCAGCAACGAATGAAGATGAATAAAAAATTGCAGCAATTGAGGGCACCGAAGAAGAGGCAGCTTCAGGCTACAAAATTGAGTGTGGAAGGCCGTGGTATGGTCAAATATCTATAA 1515 0.4647 MGYEDNPYRDEDGEPLMDFDDVQSDREPSPQPRHQLDDYEDDVNDEWRGRDRSQTPVYDNDAARSKPRKRLIKKSDAGKQSVAPELEDEEEEGYVPEARFDEEDGRKRKKGKEVGSGKKEKRLKGEPRFGSGGGSKFGGSKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDHEGVRNLDDDNFIDDTGVEPAYYGSDEPRSPGDAPQAEEGEEDAEMKDLFKIGKKRKKNERSPAEIALLVENVMAELEVTAEEDADLNRQGKPAINKLKKLTLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEILRILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPFRRPSVKKPTNKAAGISRDSDLDLEISQPRSGESSSRQHASRPEATPLDFVIRPQSKIDPDEIRARAKQAAQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMVKYL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1393 504 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 290 378 IPR035441 -
Pvu2g1393 504 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 234 381 IPR035441 -
Pvu2g1393 504 ProSiteProfiles TFIIS N-terminal domain profile. 295 378 IPR017923 -
Pvu2g1393 504 Pfam TFIIS helical bundle-like domain 322 375 IPR017923 -
Pvu2g1393 504 PANTHER PROTEIN IWS1 HOMOLOG 1 1 504 IPR044204 GO:0009742|GO:0032784
Pvu2g1393 504 MobiDBLite consensus disorder prediction 421 436 - -
Pvu2g1393 504 MobiDBLite consensus disorder prediction 145 183 - -
Pvu2g1393 504 MobiDBLite consensus disorder prediction 99 127 - -
Pvu2g1393 504 MobiDBLite consensus disorder prediction 1 215 - -
Pvu2g1393 504 MobiDBLite consensus disorder prediction 1 66 - -
Pvu2g1393 504 MobiDBLite consensus disorder prediction 394 451 - -
Pvu2g1393 504 PANTHER PROTEIN IWS1 HOMOLOG 1 1 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1393 Pvu-Chr2 26696107 26699445 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu2g1393 Med26 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1393 K17498 - gmx:100801805 850.892