Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1327 ATGGCTGGGTCACTGACGCCAGGGGCGATAAAGGAAATATGCGGTGCCAATTGTTCCAGTGGTTTGAAGCCGGTTTTGCAAGTTATAGATTTGAAGCTAGTGCAGTCGCAACAAGCCAGCAACACCGAGAGGTACCGGCTGGTTCTCTCCGACGGTTCCTTTTACCAGCAAGGCATGCTTGCCACGCAGATGAACGAACTGGTTCATTCCGGAAAGTTGCAAAAAGGTTCCGTTGTTAGGCTCGTTCAGTTTATCTGCAACGATGTCCAGAACCGCAAGATTATTGTTATAATTGACCTAGATGTTGTTGTGGAAAAATGTGAGTTGATTGGAGAACCTGTCGCGTTACCAAAAGATGGACCTGCAGAATCTAGCACTGGTCAATCAGGAGTCACCCCTGGAAATTCACAACCTTTGAATAACCGTTCACACTCAGGCGGCGTGACTGCTAGACCGAACATGGCTGTACCATCTCCAGATCATCCAAGAGTGAATGCCAGTAGTGTTTATACTGGTATTTCTAACTCTGGATCTAGTTATTCCAGCAATGCACCTCCTACATATCCTAAAGTAGAATCTGGAGTTAATTCTAGATCAGCACCTTTCACTGGATCTCATGGTGATCAGAGCTCGGGTATTGGTCATCCCCAATCTGAGGCTTCAAGGTCCTTTCCAAACTCTTATGCTCGTCCACCTCAGCCTATGTATCGGCAGCCATCTCCAATGTACAATAACAGAGGGCCAATGGGAAAAAATGAAGCTGCCCCCAGGATAATTCCAATAGCAGCATTGAATCCTTACCAGAATATGTGGACGATTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTGTTTTCATTTGACCTTTTGGATTCTGATGGTGGGCAAATTCGGGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTAATTGAAGCTGGTAAGGTATACCTAGTTTCCAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCACCTTCCCAATGACCAAGAGCTAACTCTTGATATGACATCGATTATACAGCCATGCCCTGATGATGATAACTCAATTCCAAAACAGACTTTTAATTTTCGCCCCATTAGTGAAATTGAAAGTTTGGAAAGCAACACAATTGTGGATGTGATTGGTGTGGTAACTTCAATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACACTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAGTTAACTTTGTGGGGAAATTTTTGCAACGTGGAAGGACAAAAGCTGCAAAATATCTGTGATGATGGGGCATTTCCAGTTTTGGCTGCAAAAGCTGTCAGAATTAATGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTTCTGTTCGTAGAGCCTGATTTTCAAGAGGCTTACACACTTAAAAGATGGTTTGAAAATGAAGGGAAGAGTGTCCCAACTCTCTCTATTTCTAGGGATACATCTAATTTTCCTAAGAATGATAATCGGAAGACTGTATCTCAAATTAAAGACGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTGTGCAACTATTTCATACATTAAGTATGATAACTTCTGTTACCCAGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGATGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGCGTGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAGATGATGTAAGATTTGCTGAAATCATCCGGAAGATTCTCTTCACCGAGTATGTGTTCAAGTTGAAAGTAAAGGAGGAGACATTCAGTGATGAACAACGCGTTAAGTCAACGGTAGTTAAAGCAGAAAAGGTAAACTATGCATCCAAATCCAGAGTTAGTTTGGAATTGATTGATAAACTCTTGACTGGGAAATCAGAAGGTACTACCACCGTTCCAAACTCTTTATCCGGTAATGCTGGACAGGGGAGTGTTGAAACTAGACAAGTAACGCCATCAGCTTATAACACAATAAAGAGTAGCACTAATAGCAGTAGAGATTTTGGGATGCCAGCAAATCAAGTCGGTCAACAGTATGGAAACCAATATGGCAATTTTGGTTCAGCAGGTGCTCCTAGTGCATATACTTCATGCACCAACTGTGGAGGTTCTGGTCATACTTCTATGCTTTGCCCAAATATTAGAAATCTGCCTGGACAGTCTTCAGGTGGGGGCTTTTCCAACAGGGCATCATATGGTGGATCAGGTGGCGGTGCTTCTGGTGAATGCTTCAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCAGTGCACCAACTGCATCATATGGAAGCGCTAATACAATGCAGGGAAGATATGGTATCGCTCAAAACCAACAGTTTGGAGGATATTGA 2601 0.4283 MAGSLTPGAIKEICGANCSSGLKPVLQVIDLKLVQSQQASNTERYRLVLSDGSFYQQGMLATQMNELVHSGKLQKGSVVRLVQFICNDVQNRKIIVIIDLDVVVEKCELIGEPVALPKDGPAESSTGQSGVTPGNSQPLNNRSHSGGVTARPNMAVPSPDHPRVNASSVYTGISNSGSSYSSNAPPTYPKVESGVNSRSAPFTGSHGDQSSGIGHPQSEASRSFPNSYARPPQPMYRQPSPMYNNRGPMGKNEAAPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEAGKVYLVSRGSVKPAQKNFNHLPNDQELTLDMTSIIQPCPDDDNSIPKQTFNFRPISEIESLESNTIVDVIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQKLQNICDDGAFPVLAAKAVRINDFNGKSVGTIMTSLLFVEPDFQEAYTLKRWFENEGKSVPTLSISRDTSNFPKNDNRKTVSQIKDEKLGTSEKPDWISVCATISYIKYDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIMGVPAKDLYYLKYEEQDDVRFAEIIRKILFTEYVFKLKVKEETFSDEQRVKSTVVKAEKVNYASKSRVSLELIDKLLTGKSEGTTTVPNSLSGNAGQGSVETRQVTPSAYNTIKSSTNSSRDFGMPANQVGQQYGNQYGNFGSAGAPSAYTSCTNCGGSGHTSMLCPNIRNLPGQSSGGGFSNRASYGGSGGGASGECFKCHQPGHWARDCPGSSAPTASYGSANTMQGRYGIAQNQQFGGY* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1327 866 MobiDBLite consensus disorder prediction 707 728 - -
Pvu2g1327 866 PANTHER REPLICATION PROTEIN A SUBUNIT 5 734 - -
Pvu2g1327 866 Pfam Replication factor-A C terminal domain 542 691 IPR013955 -
Pvu2g1327 866 Pfam Zinc knuckle 821 836 IPR001878 GO:0003676|GO:0008270
Pvu2g1327 866 Gene3D - 257 367 IPR012340 -
Pvu2g1327 866 MobiDBLite consensus disorder prediction 164 228 - -
Pvu2g1327 866 Gene3D - 369 508 IPR012340 -
Pvu2g1327 866 CDD RPA1_DBD_A 260 362 - -
Pvu2g1327 866 MobiDBLite consensus disorder prediction 114 251 - -
Pvu2g1327 866 CDD RPA1_DBD_C 526 699 IPR013955 -
Pvu2g1327 866 CDD RPA1_DBD_B 392 499 - -
Pvu2g1327 866 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pvu2g1327 866 PANTHER REPLICATION FACTOR A 1, RFA1 5 734 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pvu2g1327 866 SMART c2hcfinal6 821 837 IPR001878 GO:0003676|GO:0008270
Pvu2g1327 866 SMART c2hcfinal6 776 792 IPR001878 GO:0003676|GO:0008270
Pvu2g1327 866 ProSiteProfiles Zinc finger CCHC-type profile. 777 792 IPR001878 GO:0003676|GO:0008270
Pvu2g1327 866 Gene3D - 773 843 - -
Pvu2g1327 866 MobiDBLite consensus disorder prediction 122 148 - -
Pvu2g1327 866 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pvu2g1327 866 SUPERFAMILY Nucleic acid-binding proteins 376 505 IPR012340 -
Pvu2g1327 866 SUPERFAMILY Nucleic acid-binding proteins 522 701 IPR012340 -
Pvu2g1327 866 ProSiteProfiles Zinc finger CCHC-type profile. 822 836 IPR001878 GO:0003676|GO:0008270
Pvu2g1327 866 SUPERFAMILY Nucleic acid-binding proteins 258 371 IPR012340 -
Pvu2g1327 866 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 235 698 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pvu2g1327 866 Pfam Replication protein A OB domain 381 484 IPR031657 -
Pvu2g1327 866 SUPERFAMILY Retrovirus zinc finger-like domains 807 838 IPR036875 GO:0003676|GO:0008270
Pvu2g1327 866 Gene3D - 3 116 IPR012340 -
Pvu2g1327 866 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Pvu2g1327 866 Pfam OB-fold nucleic acid binding domain 271 358 IPR004365 GO:0003676
Pvu2g1327 866 Gene3D - 509 700 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1327 Pvu-Chr2 25826093 25830036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1327 1 803 Core DNA Replication Machinery Family AT5G45400 50.461 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1327 K07466 - gmx:100778597 1326.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1327 2 25826093 25830036 Pvu2g1327 2 25826093 25830036 ECH