Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1318 ATGGTTAAGCACAACAATGTTATCCCCAGCGGGCACTTCCGCAAGCATTGGCAAAACTATGTGAGGACATGGTTCAATCAACCAGCGAGGAAGACAAGAAGACGTTTGGCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCCACTGCAGGACCTCTTAGACCTGTTGTGCATGGTCAAACTTTGAAATACAATATGAAAGTTAGAGCTGGAAGAGGATTTTCTCTTGAAGAGCTGAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACAATCGGAATTTCTGTTGATCACCGCCGCAGAAACCGTTCATTGGAAAGTATGCAATCAAATGTGCAGAGGCTGAAAACCTACAAGGCCAAATTGGTTGTCTTCCCAAGACGCGCACGCAAGGTCAAGGCTGGTGACTCTACTCCTGAGGAACTTGCAAATGCAACACAAGTCCAGGGTTCATACTTACCTATTGCGAGGGAGAAGGCTCCTGTTGAACTTGTGAAGATCACAGACGACATGAAGGCATTCAAAGCTTATTACAAGCTAAGACTTGAACGCACCAACAAACGCCATTTTGGTGCCAGACTGAAGAAGGCTGCCGAGGCAGAGAAGGAAGACAAGAAGTGA 624 0.4663 MVKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKLRLERTNKRHFGARLKKAAEAEKEDKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1318 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Pvu2g1318 207 Gene3D - 167 207 - -
Pvu2g1318 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pvu2g1318 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Pvu2g1318 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pvu2g1318 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1318 Pvu-Chr2 25729322 25731579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1318 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 84.817 4.10e-124 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1318 K02873 - gmx:100805957 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1318 2 25729322 25731579 Pvu3g2844 3 50222379 50224361 PCT