Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1281 ATGTTGCAATACCTCTATTTACAAGGAAATTCATTACAAGGATTCATACCACCCTCTTTGGCATCACTTAAAGAATATCTCAATGTATCTTTCAACATGTTAGACGGTGAGGTTCCAACTGAAGGTGTCTTTCGAAATGCAAGTGGACTTGTGGTGACTGGAAATGGTAAGCTTTGTGGAGGTATTCCAGAAGTGCATCTACCACCATGCACGGTGAAAGGTGTGAAACTTGCAAAACACCTCAAATTCAAGTTGTTAGCAGTGTTATTTAGAACTCTTGAGTTAGACGACAGAGTTGTTGCCATAATGGTCCTAAATCTTCAAAGAAAAGGAGCTCAAAAGAGTTTCATTGCTGAATGCAATGCACTTAAAAATGTTAAACATCGAAATCTGGTTCCGATTTTAACATGTTGTTCCAGTACGGATTACAAAGGTGAAGAATTTAAAGCTCTAGTTTTTGAGTATATGAGAAACGGAAGCTTAGAGCAATGGCTCCACCGAAGGACACTGGGGGCAGAACATCAGAGATCGTTGAACCTTGATGAAAGATTAAACATCATGATTGATGTTGCTTCTGCGATACATTATCTTCATCATGAATGTGAGAAATTGATTATTCATTGTGACTTAAAGCCAACCAATGTCCTCCTTGATGATGATATGGTTGCTCGTGTGAGTGATTTTGGCATTGCAAGACTACTCTCAACTGTCAACTCTACCACTTCTGGGCAAACTAGTACTATTTGTATAAAGGGGACAGTTGGCTATGCTCCTCCAGTATGGAATGGGTCTATGAATGGTGACATGTATAGTTTCGGGATTCTATTGTTGGAGATTCTTACCGGAAGAAAACCCACAGATGAAATCTTTGGAGATGGTCAAAATTTGTATAGCTTTGTGAAAAATTCATTTCCTGATAATCTTTTACAGATTTTGGATCCATCGCTCGTACCAAACCATGGACAAGCAAGCATAGATGAAGAAAACAATCAGAATCTTACTTCAAGTGTTCAAAAGTGCTTAGTTTTACTCGTTCAGATTGGACTTAAGTGTTCTGTGGAGGCACCAGATGAAAGAATGAATATAGTAGTGGATGTCAATATAGAACTAAGCAAAATTAGAAGAACCTTTCTTATTGAACGTCGAAGGGAACAGGCTTCTTTTCGTAGTTCAGGTGTTGATGCTTGA 1188 0.3847 MLQYLYLQGNSLQGFIPPSLASLKEYLNVSFNMLDGEVPTEGVFRNASGLVVTGNGKLCGGIPEVHLPPCTVKGVKLAKHLKFKLLAVLFRTLELDDRVVAIMVLNLQRKGAQKSFIAECNALKNVKHRNLVPILTCCSSTDYKGEEFKALVFEYMRNGSLEQWLHRRTLGAEHQRSLNLDERLNIMIDVASAIHYLHHECEKLIIHCDLKPTNVLLDDDMVARVSDFGIARLLSTVNSTTSGQTSTICIKGTVGYAPPVWNGSMNGDMYSFGILLLEILTGRKPTDEIFGDGQNLYSFVKNSFPDNLLQILDPSLVPNHGQASIDEENNQNLTSSVQKCLVLLVQIGLKCSVEAPDERMNIVVDVNIELSKIRRTFLIERRREQASFRSSGVDA* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1281 395 SMART serkin_6 83 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1281 395 Gene3D Phosphorylase Kinase; domain 1 87 159 - -
Pvu2g1281 395 Pfam Protein tyrosine and serine/threonine kinase 97 301 IPR001245 GO:0004672|GO:0006468
Pvu2g1281 395 SUPERFAMILY Protein kinase-like (PK-like) 93 362 IPR011009 -
Pvu2g1281 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Pvu2g1281 395 PANTHER OS04G0122200 PROTEIN 91 377 - -
Pvu2g1281 395 PANTHER OS04G0122200 PROTEIN 23 90 - -
Pvu2g1281 395 SUPERFAMILY L domain-like 2 59 - -
Pvu2g1281 395 PANTHER LRR RECEPTOR-LIKE KINASE 91 377 - -
Pvu2g1281 395 PANTHER LRR RECEPTOR-LIKE KINASE 23 90 - -
Pvu2g1281 395 Gene3D Transferase(Phosphotransferase) domain 1 160 389 - -
Pvu2g1281 395 Gene3D Ribonuclease Inhibitor 1 76 IPR032675 -
Pvu2g1281 395 ProSiteProfiles Protein kinase domain profile. 75 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1281 Pvu-Chr2 25033678 25035548 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1281 7 89 Receptor kinase-like Gene Family AT3G47570 42.353 1.51e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pvu2g1281 PK_Tyr_Ser-Thr 1.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1281 - - pvu:PHAVU_002G124200g 780.785