Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1277 ATGGGGTCCAGTGGCAGCAAAGCCACGTCATCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCGTCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAACGGAGATGATGTGACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAGACAGATTCTTTTAGGAAGGTGAAACCGGATAAATCTGATGAAGTACCTTCTAACGTTGACCTTGAGGAGTGGCGTCACACTGCATCCAGAACTGGTAGCAGCTCTACACATTCTTCTTCAAATCAGTCCTTGAACCCCTCAAGTCGGTTCCTATCTCGTTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCGGTTTCTTCAACAAGTCTCTCAATATATGATGAAGGTGAGCTTAGTTTACATCCAGGGCCTCCTGGCAGCTTGATTAATAGAAATGAAACTCAACACCGTAGTGATTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTAGGCAGTGTCATGAAGAAACCTCTAATAGTTTACGACCTAATGCCCCACCATTGGTTTCACCTGGTAATTTGGTTGGCAGTCGCCCACTTTCTTCTGTCCAGGATGTGGCTAGAGATGGAAATGTTGCAAGAGAAGTGCCTGATGTCAACATGTTTTCTCCAAGAATTCATACTGACACAGAAAATGTTGAGACTAGACATGCTGATAGAAGAAATGGAGCTCGAGAACCTGTTGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGGCGATCAACATTGTCAGACTTCACTTTTTGCCCTATGCAACGGGAGAGAGAAGCAAGAGATGCTGGTCAAGAGAATGGAAGACGAGTGGGGGATAGAGACACAAGAGTGTCATCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCTGCCCAGTACACCAAGCTCCTTGTTTGGCATCCAAGACTATGATGTTGAGCCGTCACGTTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCTGGTCAACACAGAAACGGTCGTTGTGCATGCAGAACCAATAGTCGTGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAACAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACAAAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCGCTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1683 0.4474 MGSSGSKATSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNGDDVTYTSGNEIDSDEGKTDSFRKVKPDKSDEVPSNVDLEEWRHTASRTGSSSTHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSLSIYDEGELSLHPGPPGSLINRNETQHRSDLLNASFVSQVPRQCHEETSNSLRPNAPPLVSPGNLVGSRPLSSVQDVARDGNVAREVPDVNMFSPRIHTDTENVETRHADRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREARDAGQENGRRVGDRDTRVSSTGRNASNSSTPRYPLPSTPSSLFGIQDYDVEPSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRTNSRDTNSNDDTNARASISRIVMLAEALFEQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYKKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICVSDSLPREN* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1277 560 MobiDBLite consensus disorder prediction 312 332 - -
Pvu2g1277 560 MobiDBLite consensus disorder prediction 1 121 - -
Pvu2g1277 560 MobiDBLite consensus disorder prediction 333 359 - -
Pvu2g1277 560 MobiDBLite consensus disorder prediction 69 101 - -
Pvu2g1277 560 SUPERFAMILY RING/U-box 483 553 - -
Pvu2g1277 560 ProSiteProfiles Zinc finger RING-type profile. 505 547 IPR001841 -
Pvu2g1277 560 MobiDBLite consensus disorder prediction 1 19 - -
Pvu2g1277 560 CDD RING-H2_PA-TM-RING 504 547 - -
Pvu2g1277 560 MobiDBLite consensus disorder prediction 102 121 - -
Pvu2g1277 560 MobiDBLite consensus disorder prediction 312 372 - -
Pvu2g1277 560 Pfam Ring finger domain 504 547 IPR001841 -
Pvu2g1277 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 552 IPR013083 -
Pvu2g1277 560 SMART ring_2 505 546 IPR001841 -
Pvu2g1277 560 MobiDBLite consensus disorder prediction 54 68 - -
Pvu2g1277 560 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 560 - -
Pvu2g1277 560 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1277 Pvu-Chr2 24988426 24993535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1277 231 554 C3H Transcription Factor Family AT5G45290 59.587 1.19e-110 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1277 - - gmx:100815830 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1277 2 24988426 24993535 Pvu2g1277 2 24988426 24993535 ECH
Pvu2g1277 2 24988426 24993535 Pvu3g2858 3 50306825 50309849 PCT