Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1231 ATGAGTGATGCAAAAGAACACGAAGAGGCTGGCCAGGGCAAGCCCTCGGTCGTGGAAGAGAACAAGCTGTTGGTTGATACAAAGGATCGAGTTCAGCCTGAAGCTGTCTCTGCTCCTGTTCCAGTAGAGGAAACGTCAAACCTTGTTGAAAATGGGTTAAATCATGCTGAGAATGGGTCAAATCTTGCTGAAAATAAGAAGGAAGAGCCACTTGCTGAACATAAAAATGTGCAACTTGAGGTTGTTTCAGAAGGAATTCCACAAGAGGATGTTCAAAGTACACTTCACTCTGTCCCAGCAGAGGCTCATACTCAGGTTTTGAATACGACTGAGTGTGAAGAAGCTTCTAAAGCGAAGGGGGAAGCTGAAGAATTTCCCACAATTAATAAAAAGGTTGAGAATAGTGATGATATTTGTCGGAATAGTATTGATGATGTTGAAATGGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGGTTGACAGTAAAACTTGCGACAATGGTGACCCAATGCCTGCAAGTCATAATGAACCTGCTATATCACAACCTGCTCCTACTGATACAAACACTGAATTTGTGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTACCGATCCTGCTGATAATGGGAATTCAAACTCAAAGCACTTGTTTTTCTTGGATGCTGACCATTCCTATGATGGTAACGAGTCAGGAACCGAGGAGGACCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCTTGGAATTCAAACATCCTAAGTTTTATGGAGAAGGACTAAATTGCCTTAAGTTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACAGTCTCATGGACCTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTAAATGTGCCGATTTCTTCTCTCCCAGAGCCTATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGGAATGGTGAAGTCAGTGACCCCATTATTAAGGATAGGAATTCCGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAACCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCTTCTAAACCACAATTGGACACTACTGTGATTGATATAGGACCTCCTGCTGACTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTGCAGTCAGACCCAGCAGGACGCCTAGTCATAAGTGGTGAGCCAGAGCATCCCAACAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCGGCGGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACAGTCAGAATAG 1605 0.4405 MSDAKEHEEAGQGKPSVVEENKLLVDTKDRVQPEAVSAPVPVEETSNLVENGLNHAENGSNLAENKKEEPLAEHKNVQLEVVSEGIPQEDVQSTLHSVPAEAHTQVLNTTECEEASKAKGEAEEFPTINKKVENSDDICRNSIDDVEMAVEVKPEGCGVVDSKTCDNGDPMPASHNEPAISQPAPTDTNTEFVNVLEVENKADEKQATDPADNGNSNSKHLFFLDADHSYDGNESGTEEDQSAFMKELENFFRERSLEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPISSLPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1231 534 SMART bright_3 239 330 IPR001606 GO:0003677
Pvu2g1231 534 Gene3D - 436 534 IPR008978 -
Pvu2g1231 534 SUPERFAMILY HSP20-like chaperones 443 530 IPR008978 -
Pvu2g1231 534 SMART ARID_2 235 325 - -
Pvu2g1231 534 Pfam Hsp20/alpha crystallin family 451 533 IPR002068 -
Pvu2g1231 534 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 434 534 IPR002068 -
Pvu2g1231 534 MobiDBLite consensus disorder prediction 1 70 - -
Pvu2g1231 534 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 27 533 IPR045147 GO:0006357
Pvu2g1231 534 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 27 533 - -
Pvu2g1231 534 CDD ARID 240 325 - -
Pvu2g1231 534 SUPERFAMILY ARID-like 233 339 IPR036431 GO:0003677
Pvu2g1231 534 CDD ACD_sHsps-like 449 529 - -
Pvu2g1231 534 ProSiteProfiles ARID domain profile. 238 329 IPR001606 GO:0003677
Pvu2g1231 534 Pfam ARID/BRIGHT DNA binding domain 241 325 IPR001606 GO:0003677
Pvu2g1231 534 MobiDBLite consensus disorder prediction 1 29 - -
Pvu2g1231 534 Gene3D - 238 335 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1231 Pvu-Chr2 24177799 24184061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1231 222 532 ARID Transcription Factor Family AT1G76510 63.608 3.63e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu2g1231 HSP20 1.5e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1231 - - gmx:100791081 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1231 2 24177799 24184061 Pvu2g1231 2 24177799 24184061 ECH
Pvu2g1231 2 24177799 24184061 Pvu3g2801 3 49825311 49833639 PCT