Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1219 ATGACGCGCGCACTCAGAATTCTCAAATCGGCGGATAACGCCGCGGTGGCAGCGGCGGCTCCGCCGCCGGAGGCGGTGGCGCTCGAGTCCGATTTCGTGGTGATTCTGGCTGCTCTCCTGTGCGCTTTAATCTGCGTGGTGGGACTTGTTGCGGTGGCGCGGTGCGCGTGGCTCCGGCGAGGTCCCGGCGGCGGAAACTCGCCGCGGCAGGCGGTGGTGAACAAGGGACTGAAGAAGAAGGTGCTGCAGTCGCTGCCGAAGTTCGCGTACGTGGACAGCAACCCGAGCAAGTGGGTGGCGACGTCGGAATGCGTGATTTGCCTGGGTGATTTCGCCGCCGGCGACGAGATTCGCGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTGTCCTGCATCGACGAGTGGCTGAGGTCCCACTCCTCCTGCCCTTCCTGCCGCCAGGTCCTCGCTGTCACCAGGTGTCAGAAGTGCGGCCGCTTTCCGGCCACGGCTGCCGGAGCCTCGAGAAGCGGCGCCAGTGAACTGGAATTGAAGTCCAGAGAAGACAACAATGCTGCTTCAATCGGTAATTGCAATAATAACAACGGTGATGGCGGTGGTGGAAGTGGTAATAACGTGAATCATCATCATAGCCACCACTTGAACAGTGGGTTCTTGCCATGA 663 0.6154 MTRALRILKSADNAAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGGGNSPRQAVVNKGLKKKVLQSLPKFAYVDSNPSKWVATSECVICLGDFAAGDEIRVLPQCGHGFHVSCIDEWLRSHSSCPSCRQVLAVTRCQKCGRFPATAAGASRSGASELELKSREDNNAASIGNCNNNNGDGGGGSGNNVNHHHSHHLNSGFLP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1219 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 151 IPR013083 -
Pvu2g1219 220 Pfam Ring finger domain 103 146 IPR001841 -
Pvu2g1219 220 MobiDBLite consensus disorder prediction 188 212 - -
Pvu2g1219 220 SMART FANCL_C_2 100 154 - -
Pvu2g1219 220 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Pvu2g1219 220 SUPERFAMILY RING/U-box 83 151 - -
Pvu2g1219 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 187 - -
Pvu2g1219 220 MobiDBLite consensus disorder prediction 188 220 - -
Pvu2g1219 220 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 187 - -
Pvu2g1219 220 CDD RING-H2_PA-TM-RING 103 146 - -
Pvu2g1219 220 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1219 Pvu-Chr2 23903722 23904736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1219 1 182 C3H Transcription Factor Family AT1G76410 55.556 1.01e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1219 - - vun:114170353 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1219 2 23903722 23904736 Pvu2g1219 2 23903722 23904736 ECH
Pvu2g1219 2 23903722 23904736 Pvu9g1526 9 21623693 21624373 ECH
Pvu2g1219 2 23903722 23904736 Pvu3g2793 3 49753078 49753899 PCT