Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1214 ATGTTTTTCAAGGCCCCTTATCCAACCATGATTAAAGTTTGGCCCTTGGTTTTCATGGTTCTCTCCATTGGATGCTTTTCAAATGGGCGTGGCGGGCAAAATTCCACAGTACCAGATTTTGTAAATATTGGGGCTCTCTTCTCCTTCAATACCAGTGTTGGTAGAACTATAAAAGTTGCATTAGAAGCTGCCTTTGAAGATATAAATTCTGATCCAACTATTCTTGGTAGAACCAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGACAGACGGTGGCGATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTAATATTGCAAATGAGCTCCAAGTTCCTCTTTTGTCATTTTCAGCTTTAGACCCTACTCTTTCTTCACTTCAATTCCCATTCTTCATTAGAACTTGCCATAGTGATCTTTTTCAAATGACTGCAATAGCAGACCTTATTGACTACTATGGCTGGAAAGATGTTATCGCTGTCTACCCTGACGATGATAATGGGAGAAATGGAATTGGCGCATTAGGTGATAAGCTTGCGGAGAGGCGTTGCAAGATATCATATAAAGCAGCTTTGAGTCCCCAAGCATCTATGGAAGAGATTACTAATGTGCTTGTGCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGGCAATACTCTACTTGGCCCCCAGGTGTTTACAGTTGCAAAGAATCTAGGAATGATGGGAACTGGTTATGTCTGGATAGCCACTGCCTTCCTCTCTGCTCTGCTTGATATCAACTATCCCCCTTCTCCTGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTATCTACACGCCAGATTCACAGCGCAGAAGAAGTTTTGTTTCTAGGTGGAAAAACTTGACTAGTGGAAATACTGCGAATGTCAAACTTGGATTGAGTTTTTTACCTCTCTTTGCATATGACACTGTTTATGTACTTGCTCGTGCTCTTGATGCATTTTTCAAAGAAGGTAACCAAATTACATTCTCAACTGATTCAAAGCTATCTAGCATACATGGAAACAACTTGAATCTTGAGGCCTTGAAAATCTTTAATGAAGGAAATATGTTACGTAGTAACATCTATGAGGTAAACATGGTTGGTGTATCAGGTCCATTCAAGTTTACATCTGATAGAAACCTTGCTAATCCTGCATATGAAATCATTAATGTGATTGGAACAGGAACTCGGAGGATTGGTTATTGGTCTAATTACTCTGGTTTATCAGTTGTTCCTCCAGAAACTCTTTATTCCAAACCAGTCAATCTTGCCAGGAAAAATCAAAAGCTGTTTCCTGTGATTTGGCCTGGAAACACAGATGAGAGACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAGAGGTGTTAGTTACCAAGAATTTGTCTCACAGATAAAAGGCACTGATATGTTTGAGGGTTTCTGCATTGATGTATTTCTTGCTGCGGTGAATCTGTTGCCTTATGCTGTCCCCTACAGGTTCATCTCATACGGGGATGGTAAGAACAATCCTAGCATGACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCGGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCTCCCGTTGGGAAGGCAGAATCTCATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTGTGTCACAGCTGTCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTAAATGATGAATTTAGGGGACCACCCAAAAAACAAGTAGTTACCATTTTATGGTTTAGCTTTTCAACAATGTTCTTTTCGCACAGGGAAAATACAGTGAGCACACTTGGTCGTGCTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTAACCTCAATCCTCACAGTGCAACAGCTTTATTATTCCATTAAAGGCATTGAAAGTCTAGTAAATAGCAAAGAACCTATCGGCTACACGCAGGGTTCTTTTGCAAAAAACTATTTAGTTCAGGAAATTCATATTGAGGAGTCCAGGCTAGTTCCTCTGACAACACCAGAAGACATTGCTAGAGCACTGAGAAATGGCCCCAAAAATGGGGGTGTTGCTGCTTACATTGATGAGCGTGCCTACACTGACATCTTCCTCTCTAGCCGTTGTGATTTTACTGTCGTAGGTCAGGAGTTCACGAGAAATGGTTGGGGATTTGCTTTTCCACGGGACTCACCATTAGCAGTTGACATGTCAACTGCCATATTGCAAATGATAGATAGTGGAGATTTGCAAAGGATCCATGACAAATGGCTTTTGAGTAGCGCTTGCTTATCACAAGGGGCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTATGCTATTTGTGGACTTGCCTGCTTGCTTGCACTCTTCATGTATCTCATACAGATTTTGAAGCAATACCACAAGCACTACTCAAAGGAACCTGAGTCCCCTGACGGCCAAAATGTTGGATCATCAAGATCTTCACGTCTTAAAACTTTCCTTTCATTTGCAGATGAGAGAGAAGAGACTGTTAAGAGCAGATCCAAGAGAAGGAAAATGGAGAGGATCTCATACAGAACCACTGAAGGAAGCTCATCCATCGACTCGAATAAGGGATATGCTTCACGCAGAAGTGAATATGCTAGTGAAGTATTATGA 2847 0.4152 MFFKAPYPTMIKVWPLVFMVLSIGCFSNGRGGQNSTVPDFVNIGALFSFNTSVGRTIKVALEAAFEDINSDPTILGRTKLNLSLQEDSKYRGFLSIAEVLQVMARQTVAIIGPHSSVTAHVITNIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLFQMTAIADLIDYYGWKDVIAVYPDDDNGRNGIGALGDKLAERRCKISYKAALSPQASMEEITNVLVQVALAESRVIVVHGNTLLGPQVFTVAKNLGMMGTGYVWIATAFLSALLDINYPPSPDSMDEIQGVLTPRIYTPDSQRRRSFVSRWKNLTSGNTANVKLGLSFLPLFAYDTVYVLARALDAFFKEGNQITFSTDSKLSSIHGNNLNLEALKIFNEGNMLRSNIYEVNMVGVSGPFKFTSDRNLANPAYEIINVIGTGTRRIGYWSNYSGLSVVPPETLYSKPVNLARKNQKLFPVIWPGNTDERPRGWVFPNNGRLLKIGVPRGVSYQEFVSQIKGTDMFEGFCIDVFLAAVNLLPYAVPYRFISYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVGKAESHALAFLAPFTPKMWCVTAVFFILVGAVVWILEHRVNDEFRGPPKKQVVTILWFSFSTMFFSHRENTVSTLGRAVLIIWLFVVLIINSSYTASLTSILTVQQLYYSIKGIESLVNSKEPIGYTQGSFAKNYLVQEIHIEESRLVPLTTPEDIARALRNGPKNGGVAAYIDERAYTDIFLSSRCDFTVVGQEFTRNGWGFAFPRDSPLAVDMSTAILQMIDSGDLQRIHDKWLLSSACLSQGAKLEVERLQLKSFWGLYAICGLACLLALFMYLIQILKQYHKHYSKEPESPDGQNVGSSRSSRLKTFLSFADEREETVKSRSKRRKMERISYRTTEGSSSIDSNKGYASRRSEYASEVL* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1214 948 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Pvu2g1214 948 SMART GluR_14 482 823 IPR001320 GO:0015276|GO:0016020
Pvu2g1214 948 PANTHER GLUTAMATE RECEPTOR 3.6 20 933 - -
Pvu2g1214 948 Pfam Bacterial extracellular solute-binding proteins, family 3 536 821 IPR001638 -
Pvu2g1214 948 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 933 - -
Pvu2g1214 948 CDD PBP1_GABAb_receptor_plant 42 438 IPR044440 -
Pvu2g1214 948 Pfam Ligand-gated ion channel 822 854 IPR001320 GO:0015276|GO:0016020
Pvu2g1214 948 Gene3D - 59 409 - -
Pvu2g1214 948 SUPERFAMILY Periplasmic binding protein-like I 37 473 IPR028082 -
Pvu2g1214 948 Gene3D - 788 820 - -
Pvu2g1214 948 PIRSF IGluLR_plant 9 946 IPR017103 -
Pvu2g1214 948 SUPERFAMILY Periplasmic binding protein-like II 458 823 - -
Pvu2g1214 948 MobiDBLite consensus disorder prediction 901 948 - -
Pvu2g1214 948 Gene3D - 592 717 - -
Pvu2g1214 948 CDD GluR_Plant 481 821 - -
Pvu2g1214 948 Gene3D - 157 434 - -
Pvu2g1214 948 Gene3D - 475 591 - -
Pvu2g1214 948 Pfam Receptor family ligand binding region 59 419 IPR001828 -
Pvu2g1214 948 MobiDBLite consensus disorder prediction 922 939 - -
Pvu2g1214 948 Gene3D - 751 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1214 Pvu-Chr2 23799592 23804616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1214 14 920 Ion Channels AT3G51480 56.608 0.0 1086
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1214 K05387 - gmx:100793320 1649.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1214 2 23799592 23804616 Pvu2g1214 2 23799592 23804616 ECH
Pvu3g2788 3 49677600 49682587 Pvu2g1214 2 23799592 23804616 ECH
Pvu2g1214 2 23799592 23804616 Pvu3g2788 3 49677600 49682587 PCT