Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1197 ATGGGTGTCTGTTTTGCTTCCCCCGCTCGCAGACAATCACCCAACTCCACATCCCCTCAATTAGGTTCAGCGCCAGGGAGTAGAGACTTGACAGTATCCTTGGAGAGCGTAGAAGGAAAGAGTGAAGTTTCGGAGGAGTCTGGAGTTGTCGGAAGCAGTAGTAATGGCAGTGGCATTGTTTTTCCGAGTGAGGAAATGAGGAGGTTGAAGGAGTTTAGTTTCGCGGAGCTGAAAGCAGCCACGAAGAGTTTCAAGTCGGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATGAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTTCAAGAGTGGCAGTCAGAAATAAATTTTTTAGGAAGAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGATGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGTGGTAACACAGTACCACTGTCTTGGGACACTCGACTCAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTACTTGCACACCTCAGAGAAGCAAATCATATATAGAGATTTCAAAGCCTCCAATATACTACTCGATGAGGAGTTCAATGCGAAAATATCAGATTTTGGTTTGGCGAAATTAGGCCCTTCTGTGGGAGATTCACACGTGACTACCAGGATCATTGGAACATATGGGTATGCTGCTCCCGAATACATTGCAACAGGTCACCTTTATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAACTGCTGAAAGGGATGCGGGCACTTGATGTAAATCGCCCTTCAGGGCAGGAAAATCTGGTTGAGTGGATGAAGCCTTATCTATCTGATAAAACCAAGTTGAAAAGTGATATTATGGATGAGAAGATTGAGGGTCAGTATTCAACCAAAGCAGCACTGAAAGCAGCACAACTTACTCTGGAATGCCTTCAAAATGACCGTAATAAACGTCCTTCTATGAAAGATGTTCTTCACACATTGGAAAGCATCCAAGCTATCAAGGTTAGAAGGAGGAAAAGAAACAAACATTGTTCTAAGTTTGCAGCTATGAACAATTTCCAATAG 1182 0.4416 MGVCFASPARRQSPNSTSPQLGSAPGSRDLTVSLESVEGKSEVSEESGVVGSSSNGSGIVFPSEEMRRLKEFSFAELKAATKSFKSDALLGEGGFGKVYKGWLHEKTLTPTKAGSGIMVAIKKLNPESMQGLQEWQSEINFLGRVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWSGNTVPLSWDTRLKIAIGAARGLAYLHTSEKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSVGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLELLKGMRALDVNRPSGQENLVEWMKPYLSDKTKLKSDIMDEKIEGQYSTKAALKAAQLTLECLQNDRNKRPSMKDVLHTLESIQAIKVRRRKRNKHCSKFAAMNNFQ* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1197 393 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Pvu2g1197 393 PANTHER OS01G0588500 PROTEIN-RELATED 44 380 - -
Pvu2g1197 393 Gene3D Phosphorylase Kinase; domain 1 68 169 - -
Pvu2g1197 393 CDD STKc_IRAK 90 369 - -
Pvu2g1197 393 ProSiteProfiles Protein kinase domain profile. 84 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1197 393 Gene3D Transferase(Phosphotransferase) domain 1 170 391 - -
Pvu2g1197 393 SUPERFAMILY Protein kinase-like (PK-like) 67 371 IPR011009 -
Pvu2g1197 393 MobiDBLite consensus disorder prediction 1 56 - -
Pvu2g1197 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Pvu2g1197 393 Pfam Protein tyrosine and serine/threonine kinase 87 366 IPR001245 GO:0004672|GO:0006468
Pvu2g1197 393 MobiDBLite consensus disorder prediction 9 30 - -
Pvu2g1197 393 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 44 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1197 Pvu-Chr2 23541887 23545027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1197 72 366 Glycoside Hydrolase AT3G07070 50.168 4.04e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu2g1197 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1197 - - gmx:100778116 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1197 2 23541887 23545027 Pvu3g2775 3 49575504 49580097 PCT