Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1196 ATGGGTCTCTGCTTTGCTTCTCTCGCTCCTCGCCAAACACCCTCTAGTTCTCTTCCCTATTCCGGTTCAGGGCGTGAAGGCACAAGTGTTGATGGAGGAAGCAGTAGTAGTATCAGTGGCAATAACGCTGTGTTTCCGAGAGTTGAAACGAGGAACTTGAAGCAGTTCAATTTTGCGGATCTGAAAGCGGCAACCAAGAGTTTCAGGTCTGATGTATTGCTTGGAGAAGGGGGTTTTGGGAAAGTTTACAAAGGATGGTTGGATGAGAAAACTCTGACACCAACCAAATCTGGATCTGGAATGGTAGTTGCTGTTAAGAAATTGAATTCCGAGAGTGTGCAGGGATTTCGAGAGTGGCAGTCAGAAATCAATTTTTTAGGAAGAATTTCTCACCCAAACCTGGTCAAGCTTTTGGGTTACTGTTGTGACGATGTGGAATTTCTACTTGTGTATGAGCTCATGCCAAAGGGAAGCTTGGAGAATCATCTATTTAGAAGAAATACTAGCACAGAAACACTGTCTTGGAACACCCGAATCAAAATAGCTATTGGTGCAGCTAGAGGCTTGGCTTTCTTACACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGATTACAATGCAAAAATTTCAGATTTTGGGTTGGCCAAATTAGGCCCTTCTGGGGGATATTCACACGTGACTACCAGGATCATGGGCACATATGGGTATGCTGCTCCAGAATACGTTGCAACAGGCCACTTGTATGTGAAGAGTGATGTTTATGGTTTTGGAGTAGTGCTGCTTGAAATTCTGACAGGGTTGAGGGCACTTGATAGAAATCGCCCCTTAGAGCAGCAGAATCTGATTGAATGGGCTAAGCCTTCTCTTTCTGATAAAAAGAAGTTGAAAAGCATAATGGATGAGAGAATAGAGGGTCAGTATTCAACCAAGGCAGCAATGCGAGCAGCACATTTAACTCTAAAATGCCTTCAACGTGACCATAGAAAACGTCCTCCCATGAAAGATGTTCTGGAAACATTGGAACGCATCGAAGCTATCAAGAATAGAAGACAATAA 1086 0.43 MGLCFASLAPRQTPSSSLPYSGSGREGTSVDGGSSSSISGNNAVFPRVETRNLKQFNFADLKAATKSFRSDVLLGEGGFGKVYKGWLDEKTLTPTKSGSGMVVAVKKLNSESVQGFREWQSEINFLGRISHPNLVKLLGYCCDDVEFLLVYELMPKGSLENHLFRRNTSTETLSWNTRIKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGGYSHVTTRIMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEILTGLRALDRNRPLEQQNLIEWAKPSLSDKKKLKSIMDERIEGQYSTKAAMRAAHLTLKCLQRDHRKRPPMKDVLETLERIEAIKNRRQ* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1196 361 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 17 360 - -
Pvu2g1196 361 PANTHER OS01G0588500 PROTEIN-RELATED 17 360 - -
Pvu2g1196 361 Gene3D Transferase(Phosphotransferase) domain 1 154 361 - -
Pvu2g1196 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Pvu2g1196 361 Gene3D Phosphorylase Kinase; domain 1 40 153 - -
Pvu2g1196 361 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1196 361 CDD STKc_IRAK 74 353 - -
Pvu2g1196 361 MobiDBLite consensus disorder prediction 1 38 - -
Pvu2g1196 361 SUPERFAMILY Protein kinase-like (PK-like) 42 350 IPR011009 -
Pvu2g1196 361 MobiDBLite consensus disorder prediction 9 38 - -
Pvu2g1196 361 ProSitePatterns Protein kinases ATP-binding region signature. 74 107 IPR017441 GO:0005524
Pvu2g1196 361 Pfam Protein tyrosine and serine/threonine kinase 73 350 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1196 Pvu-Chr2 23531897 23534649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1196 54 350 Glycoside Hydrolase AT3G07070 50.000 2.63e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu2g1196 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1196 - - gmx:100777578 607.831