Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1191 ATGGGAGGTGACGCTACCACCGCTGAGACTGCCACATCAGAGTCCAACACCGCCGCCGGAGTCAACATCAACATTCGTTGCTCCAATGGCTCAAAGTTTTCCGTCCAGATTAGTCTGGATTCCCTGGTCAGATCTTTCAAAGACGTTGTGGCTCGCAACTGTGACATCCCCGCTGATCAACAGCGATTGATTTATAAGGGTCGGATCCTCAAGGATGATCAAACCCTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTCCATTTGGTTCGTGGCTTTGCTCCTTCTAACAACACTGGTGGGACTAATGTTGGTGGTGCCAATACCACAACAGCCAATACCACGAGGAGTGCTGGTGCTAATGAGGGTGGGGGTTTGGGAGGGCCAGGATTTGGGGCTTCACTGTTTCCCGGACTTGGTGGTAACAATGGGATGGGGGGCGGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCGGATCTTGAACAAATGCAGCAACCGCTTTTGTCAAACCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCGGAGATCGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGTTAATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACTCTTGAAGCTACGAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATGCCGGAAATGATGGTGCAGCGGTTAGGAACTCAACTAATCCCTCAACTGCTAATTCTGAAGCAACTTCTCCTGTACCCAATACGAACCCACTTCCTAATCCATGGTCCGCTACTACTGGAACTGGAGGTGGCCAAAATAACACCAGAAGGCCAACTGCTACTGGTGGGGATGCTCGACAGCAGGCACCCACTGGCTTAGGAGGGCTTGGACTGCCTGATCTTGAAGGCATGTTGGGTGGAATGCCGGATGCTGCTATGCTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAACTCTGAGCAGCGTGGCATGCCTGATATGAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTTTACGACTGTTCTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTCATGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGTAGGCACTGGACCGATGAACAACATGGGACTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTTGCTGTTCCTAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGTTTCTTTGACACTCAAGAGAACATAAGAGCTCTTATTGCTACATCAGGGAACGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCTGGACAGTAG 1617 0.4811 MGGDATTAETATSESNTAAGVNINIRCSNGSKFSVQISLDSLVRSFKDVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNNTGGTNVGGANTTTANTTRSAGANEGGGLGGPGFGASLFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPLLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDGAAVRNSTNPSTANSEATSPVPNTNPLPNPWSATTGTGGGQNNTRRPTATGGDARQQAPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNSEQRGMPDMNSLREVMQNPEFLRLFSSPETLQQLLSFQQALMSQLGQQQSTQEPGQTGVGTGPMNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1191 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Pvu2g1191 538 SMART CBM 147 188 IPR006636 -
Pvu2g1191 538 SMART CBM 201 240 IPR006636 -
Pvu2g1191 538 SMART CBM 397 432 IPR006636 -
Pvu2g1191 538 SMART CBM 352 394 IPR006636 -
Pvu2g1191 538 SMART ubq_7 21 92 IPR000626 GO:0005515
Pvu2g1191 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Pvu2g1191 538 MobiDBLite consensus disorder prediction 276 340 - -
Pvu2g1191 538 PANTHER UBIQUILIN 3 538 - -
Pvu2g1191 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Pvu2g1191 538 SUPERFAMILY Ubiquitin-like 13 96 IPR029071 -
Pvu2g1191 538 CDD UBA_PLICs 496 534 - -
Pvu2g1191 538 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Pvu2g1191 538 MobiDBLite consensus disorder prediction 276 351 - -
Pvu2g1191 538 Gene3D - 478 538 - -
Pvu2g1191 538 Gene3D - 8 103 - -
Pvu2g1191 538 SMART uba_6 496 534 IPR015940 -
Pvu2g1191 538 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 538 - -
Pvu2g1191 538 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Pvu2g1191 538 CDD Ubl_Dsk2p_like 21 93 - -
Pvu2g1191 538 Gene3D - 196 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1191 Pvu-Chr2 23444764 23451887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1191 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 8.46e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1191 K04523 - gmx:100797539 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1191 2 23444764 23451887 Pvu2g1191 2 23444764 23451887 ECH
Pvu2g1191 2 23444764 23451887 Pvu3g2771 3 49537900 49545539 PCT