Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1188 ATGTCAATGGCAACTTCTCCTCACACCACTCTCTTCCAAACCCGCACCACCCCTTTCCCCCTCTCCTCCCCGCGCCCAACCTCCTTCAAACCCACATCCATCAAATGCGCCACCCAACTCCACACCCAACCCCCACCTCTCACCCACTCCCAAGATCGCGTCTTTAACTTCGCAGCCGGCCCCGCCACCCTCCCGGAAAAGGTCCTCCTCCGTGCCCAATCCGAGCTCTACAACTGGGGCGGATCCGGCATGAGCGTCATGGAAATGAGCCACCGCGGCAAGGAGTTTCTCTCCATAATCCAAAAAGCCGAATCAGATCTCCGAGCCCTCCTCCAGATCCCACCGGAATATTCCGTCCTCTTCCTCCAGGGCGGCGCCACAAGCCAGTTCGCTGCCTTGCCGCTCAACCTCTGCTCCCCCAACGACGCCGTCGACTACATCGTCACTGGCTCCTGGAGCGACAAGGCCGTCAAGGAGGCGCAGAAGTACTGCAAACCCAATGTGATCTGGTCTGGGAAATCCGAAAAGTACACAAAGATTCCGTCTTTTGATGATTTGAAGCAGAATCCCGGTTCTGGGTATTTGCATTTTTGTGCCAATGAGACTATTCACGGGGTTGAGTTTAAGGAGTACCCTGTTGCCCAGAGTGGTGTTTTGGTTGCTGATATGTCTTCAAATTTCTGCTCCAAGCCTGTGGATGTGTCAAAGTTTGGGGTTATCTATGCCGGGGCACAGAAGAATGTGGGGCCCTCTGGTGTCACCATTGTGATCGTCAGGAAGGACCTCATTGGGAATGCTCAGGCTCTCACTCCTTTGATGTTTGATTACAAGATCCATGATGACAACAATTCACTCTACAACACCCCTCCCTGCTACGGGATTTACATGTGTGGGTTGGTGTTTGAGGATTTGTTGGAGCAAGGGGGGTTGATGGAGGTTGAGAAAAAGAATAAGAAGAAGGCTGATATTCTGTACAATGCAATTGATGGGAGCAAAGGGTTCTATAGGTGCCCTGTTGAGAAGTCTGTGAGGTCATTGATGAATGTGCCATTCACTTTGGAGAAATCAGAGTTGGAGGGTGAGTTCATCAAGGAGGCTGCTAAGGAGAAGATGGTTCAGCTGAAGGGACACAGGTCAGTGGGAGGAGTGAGGGCCTCCATTTACAATGCCATGCCCTTGGCTGGGGTTGAGAAGTTGGTAGCTTTCATGAAGGATTTTCAGGTCAGGCATGCTTAG 1236 0.521 MSMATSPHTTLFQTRTTPFPLSSPRPTSFKPTSIKCATQLHTQPPPLTHSQDRVFNFAAGPATLPEKVLLRAQSELYNWGGSGMSVMEMSHRGKEFLSIIQKAESDLRALLQIPPEYSVLFLQGGATSQFAALPLNLCSPNDAVDYIVTGSWSDKAVKEAQKYCKPNVIWSGKSEKYTKIPSFDDLKQNPGSGYLHFCANETIHGVEFKEYPVAQSGVLVADMSSNFCSKPVDVSKFGVIYAGAQKNVGPSGVTIVIVRKDLIGNAQALTPLMFDYKIHDDNNSLYNTPPCYGIYMCGLVFEDLLEQGGLMEVEKKNKKKADILYNAIDGSKGFYRCPVEKSVRSLMNVPFTLEKSELEGEFIKEAAKEKMVQLKGHRSVGGVRASIYNAMPLAGVEKLVAFMKDFQVRHA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1188 411 TIGRFAM serC_1: phosphoserine transaminase 54 410 IPR022278 GO:0004648|GO:0006564
Pvu2g1188 411 CDD PSAT_like 55 407 IPR022278 GO:0004648|GO:0006564
Pvu2g1188 411 PIRSF SerC 48 411 IPR022278 GO:0004648|GO:0006564
Pvu2g1188 411 PANTHER PHOSPHOSERINE AMINOTRANSFERASE 1, CHLOROPLASTIC 30 411 - -
Pvu2g1188 411 ProSitePatterns Aminotransferases class-V pyridoxal-phosphate attachment site. 237 256 IPR020578 -
Pvu2g1188 411 MobiDBLite consensus disorder prediction 1 28 - -
Pvu2g1188 411 PANTHER PHOSPHOSERINE AMINOTRANSFERASE 30 411 IPR022278 GO:0004648|GO:0006564
Pvu2g1188 411 Gene3D Aspartate Aminotransferase, domain 1 307 411 IPR015422 GO:0003824
Pvu2g1188 411 SUPERFAMILY PLP-dependent transferases 52 406 IPR015424 -
Pvu2g1188 411 Gene3D - 66 306 IPR015421 GO:0003824
Pvu2g1188 411 Hamap Phosphoserine aminotransferase [serC]. 52 410 IPR022278 GO:0004648|GO:0006564
Pvu2g1188 411 Pfam Aminotransferase class-V 54 399 IPR000192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1188 Pvu-Chr2 23365486 23367256 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1188 K00831 - gmx:100798600 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1188 2 23365486 23367256 Pvu3g2876 3 50524993 50531458 PCT
Pvu3g2769 3 49528486 49529775 Pvu2g1188 2 23365486 23367256 PCT