Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1187 ATGGACTTATCAGGAGAAAGTACAAGATCAGGTTACAGCTACAGCAGGACAACGTTCGGGATGAATGAGCGTATGAGTTACAACATCTCCATATCTGCTTCCAATGAGACCACTACTCTGAATCCTGCTGCTATTTTGAGATTCACCATCAAAGTTTTTCTTCGAAATGAACCTCGAATTCCAATACATTATCGCTCTTCTACTCCCATACCGAGCCAAACCTTCTTCCAAGAGGGTCTATGTTTCTTGCGGACACTGTTATCATCATTATCATCGCACAGACTCTTCAGCGCTGAGGCTATTGAGGACATAGTAGAGTCGGTTGCTTTTGAAGTTCGAGATATCTTCCAAGTTGATGATGCTGGTCCTTCTTCTTCGGAATATCAACCGCCAGAAATTCCTGTGTGTGTTGTAATCAATGTTGCTGATAACAGCATGCTTGCGGCAAGGCAAGACCCTGCGGCGCTTACTTTGAGAATGGTGCCAGCAACGACAGAAGCCATTGAAACGTCGGTGAAGAAATCTACGGTTGTGGAGAGTGGGTGTTATTGTTCAGTATGCTTGGAAGAAGTGGTTGTGAATGGTGAGTGCTACACACTGCCATGTAATCACTTCTTTCATAAAAAATGTATTGTGCGCTGGCTATACACCAGTCACACCTGCCCCTTGTGTCGCTACCCTCTGCCAGTTTCGAAAGAGTAG 702 0.4487 MDLSGESTRSGYSYSRTTFGMNERMSYNISISASNETTTLNPAAILRFTIKVFLRNEPRIPIHYRSSTPIPSQTFFQEGLCFLRTLLSSLSSHRLFSAEAIEDIVESVAFEVRDIFQVDDAGPSSSEYQPPEIPVCVVINVADNSMLAARQDPAALTLRMVPATTEAIETSVKKSTVVESGCYCSVCLEEVVVNGECYTLPCNHFFHKKCIVRWLYTSHTCPLCRYPLPVSKE* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1187 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 231 IPR013083 -
Pvu2g1187 233 SMART ringv_2 183 225 IPR011016 GO:0008270
Pvu2g1187 233 PANTHER F6A14.12 PROTEIN-RELATED 125 229 - -
Pvu2g1187 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 229 - -
Pvu2g1187 233 Pfam Ring finger domain 183 225 IPR001841 -
Pvu2g1187 233 SMART ring_2 184 224 IPR001841 -
Pvu2g1187 233 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Pvu2g1187 233 SUPERFAMILY RING/U-box 171 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1187 Pvu-Chr2 23339888 23340723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1187 153 232 C3H Transcription Factor Family AT3G02340 38.272 2.60e-13 66.6