Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1183 ATGGATAATGGAGATGACAAGGAGGAGAGTAGTGAAGGGGAAGCAGAGAATGGGGCTAAAATGGTGCAGAAGATAACGATAATGTTAGTTTGTGGTAATGGGAAGGGTTCAAGAACAGGGTCATCATCTTCTAGTTTTTGTCAGGCAGATGAATGTGGTGTGAAATTGAACATGGCAAAGAGATACAACCGCCGTCACAAGGTTTGTGAGAGACATTCTAAGGCTCCTGTTGTTTTAGTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCAGAGTTTGATGAGACCAAAAGAAGTTGCAGAAAAACATTGGCTAGAAGAAAAACTCGCACAGACATGTCCTTAGGAGGTGATTAA 378 0.4206 MDNGDDKEESSEGEAENGAKMVQKITIMLVCGNGKGSRTGSSSSSFCQADECGVKLNMAKRYNRRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHELAEFDETKRSCRKTLARRKTRTDMSLGGD* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1183 125 MobiDBLite consensus disorder prediction 1 20 - -
Pvu2g1183 125 Pfam SBP domain 47 118 IPR004333 GO:0003677
Pvu2g1183 125 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 124 IPR044817 GO:0003677
Pvu2g1183 125 Gene3D - 37 108 IPR036893 GO:0003677|GO:0005634
Pvu2g1183 125 ProSiteProfiles Zinc finger SBP-type profile. 44 121 IPR004333 GO:0003677
Pvu2g1183 125 PANTHER - 5 124 - -
Pvu2g1183 125 SUPERFAMILY SBT domain 46 117 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1183 Pvu-Chr2 23261611 23262986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1183 35 112 SBP-box Gene Family AT3G15270 58.974 1.12e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu2g1183 SBP 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1183 - - pvu:PHAVU_002G114500g 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1183 2 23261611 23262986 Pvu2g1183 2 23261611 23262986 ECH