Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1159 ATGGGTCGCGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGCGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGCCTTACCACAAAGAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAGAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCACAGGATTGGTGAGGGTTTGGATTTGGACGAGCTGAGCTTCCAGCAACTGCGCACTCTTGAAGAGGATATGGTTGCTTCCATAGGGAAAATACGCGAGCGAAAGTTCCACGTGATCAAAACTCGAACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCACCCTCTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCCCTCACATCAACACCAACACCATGGAGAAGAACCCTTTAAAACTGACGATCTGCGCCTCGCTTAA 705 0.4454 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNLPSHQHQHHGEEPFKTDDLRLA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1159 234 MobiDBLite consensus disorder prediction 216 234 - -
Pvu2g1159 234 Coils Coil 85 105 - -
Pvu2g1159 234 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu2g1159 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pvu2g1159 234 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pvu2g1159 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g1159 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g1159 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g1159 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g1159 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu2g1159 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Pvu2g1159 234 MobiDBLite consensus disorder prediction 214 234 - -
Pvu2g1159 234 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pvu2g1159 234 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu2g1159 234 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 233 - -
Pvu2g1159 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pvu2g1159 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1159 Pvu-Chr2 22865139 22867758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1159 1 216 MADS-box Gene Family AT3G54340 52.055 7.78e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu2g1159 K-box 8.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1159 K09264 - gmx:100784496 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1159 2 22865139 22867758 Pvu2g1159 2 22865139 22867758 ECH