Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1157 ATGGAGTGCATGGAAGCAGCTTTGAAGAGCAATTTTAGGAAAGAAATGACTGTAGAACTCAGTCCAGAAACCTTCATGGAGGAGTTCAGTGTGCAAAACGGTACCACTTGCGACGACTTTTTCGTGGACGACCTTCTTGACTTCTCGCACGTCGAAGAAGAACCAGAACAACAGAAGGAACAAGACTCGGTTTGTCTATCCCTTCAAAAAGAAAACCCAAGCCAAGAACCCTATGCTTTCAAACCCGATTATTCCTCTGTGCCCACCACCGAGCTTAGCGTTCTGGCGGATGACGTGGCCGACTTTGAGTGGTTGTCTCATTTCGTGGAGGAATCCTTCTCGGAATTCTCTGCGGCGCTCCCCACCGTAACAGAGAGCAACCCGACGGGCCTTGCGGCGAAAGAGCCAAAGCCCGAACTGGAAAGCCCAGTTTTCACTTTCAAAACCCCGGTTCAGACCAAAGCGAGAAGCAAGCGAAGCAGGAACGGTGTTCGTGTTTGGCCGCTCGGTTCCCCTTCCTTCACCGAATCTTCCTCTAGCTCCACCACCACCACCTCATCATCTTCCTCCTCCTCCCCTTCCAGCCCCTTGCTAATTTACACCAACATCCCTCGTAGCCTCGACCACGTTTGCTCCGAGCCCAAACCCAATAAGCCGAAGAAAAAACACTCTTCCGACAGTGTGGGCACCCTGGCGCCGCGACGGTGCAGTCACTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCGCTCGGCCCAAAAACGCTCTGTAACGCATGCGGGGTCCGCTTCAAGTCGGGACGGCTCCTACCCGAATATAGGCCCGCTTGCAGCCCAACATTCTCCAGCGAATTACACTCCAATCATCATCGTAAAGTGCTCGAGATGCGGCACAAGAAGGAGATGGTAACTGGGACTGAAAATGGTTTTACACCTGCTCCTGTTCCCAAATTTTGA 960 0.5302 MECMEAALKSNFRKEMTVELSPETFMEEFSVQNGTTCDDFFVDDLLDFSHVEEEPEQQKEQDSVCLSLQKENPSQEPYAFKPDYSSVPTTELSVLADDVADFEWLSHFVEESFSEFSAALPTVTESNPTGLAAKEPKPELESPVFTFKTPVQTKARSKRSRNGVRVWPLGSPSFTESSSSSTTTTSSSSSSSPSSPLLIYTNIPRSLDHVCSEPKPNKPKKKHSSDSVGTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRHKKEMVTGTENGFTPAPVPKF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1157 319 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Pvu2g1157 319 SMART GATA_3 230 284 IPR000679 GO:0006355|GO:0043565
Pvu2g1157 319 MobiDBLite consensus disorder prediction 171 201 - -
Pvu2g1157 319 PANTHER GATA TRANSCRIPTION FACTOR 1 306 - -
Pvu2g1157 319 CDD ZnF_GATA 235 283 IPR000679 GO:0006355|GO:0043565
Pvu2g1157 319 MobiDBLite consensus disorder prediction 211 228 - -
Pvu2g1157 319 Pfam GATA zinc finger 236 270 IPR000679 GO:0006355|GO:0043565
Pvu2g1157 319 PANTHER GATA TRANSCRIPTION FACTOR 1 306 - -
Pvu2g1157 319 Gene3D - 230 304 IPR013088 GO:0006355|GO:0008270
Pvu2g1157 319 MobiDBLite consensus disorder prediction 125 232 - -
Pvu2g1157 319 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Pvu2g1157 319 PIRSF Txn_fac_GATA_plant 1 314 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pvu2g1157 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1157 Pvu-Chr2 22846653 22848414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1157 5 319 C2C2-Gata Transcription Factor Family AT5G66320 48.406 1.51e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu2g1157 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1157 - - vun:114172060 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2665 3 48707219 48708950 Pvu2g1157 2 22846653 22848414 ECH
Pvu2g1157 2 22846653 22848414 Pvu2g1157 2 22846653 22848414 ECH
Pvu2g1157 2 22846653 22848414 Pvu3g2665 3 48707219 48708950 PCT