Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1152 ATGGACCACCCGCTTCACCCACTGCCGGAGCCTGCACCCAACACCGCTCGGGGTTTCGAGGACTCCCGACTGGTGGGACCCCCTCTCGCGCCCGCTGGCTACGCTGATGTGGCCCAAAAAGATGTTAATAGTAGCGTGCCGAATTTGGAGGTTGCGGTCGTCGAAGGCGCCGTTTTGAAACGGAAGCGTGGTCGTCCGGCCAAGGGAGCTCCGAAAGTGGCGCCTCTGGTCAGACAAAAGAAGGACGAGGAAGATGTTTGCTTCATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGGAGGGGTTGTCCTAAAGCGTATCATCCTACGTGTATTAAACGAGACGAAGCGTTTTTTCGATCGAAGGCCAGGTGGAATTGCGGTTGGCACATATGTAGCGCCTGTCAAAAGGCGTCGCATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGATGCACAAAAGATGCTGACTTTGTTTGTGTAAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGCTGATTGAGAGAAGTGTCCAAGGAAACAAGGAAATGTGTGAAGTGGATTTCGATGACAAAGGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTACGAGCTAAAAACCCTTGGAAAGGTGTTGCTCCTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCCGAGAACTCTTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGGCAAGGGTGATTTCCTGGACAGGATAGGTTCAGGGGGCGACAGAGATATGTCTTTGCCTGAGTGCACAAAGTGGGCATCGAAGGAGCTACTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTAACAAAAAATAATCTTCGTGATCCTCAACAAATGTCCGAAATTGTTTGTGATTCTAGACTACTAAATTTGTTGGGAAAAGCTCGAGTTGGCCAAATTGAAATGCTAAAGCTCCTTGAATCCCATTTTCTTTTAAAAGACAACGGACCTGCAGAAAATACTTTTGGAGCAGGAATTATTAATACTGTTGCTAGTGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTAGTTAATGACAAGAGATGTAAAACACATAATAAGGCTGATGTTCTAGTTCCGCTAAATAATCCAGATGCATATGCTGCAATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCATGACAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCTTGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCATATAAAATTGGGACAAGAACAACTAATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCGGAAATTTCTAATCAGGAGTTCTCCGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAATAGATTGACTGTGGGTGAGATTCTAAACAAGGCATTAACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAGTCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAATATGTGGAGAAGTTGCATCTACTGAACTCTCCCGAGGAGCATCAACGCAGGCTGCATGAAATTCCAGATGTACACTCAGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAGAGGAAGCAAGATAACAATATATTTCCAAAATATATTGTGTTTGATAGAAGAGAGAGGGGCTCTTTTTTTCCAAGAATTTCGAATGGTGTCTTCAATGATGAGGGAGGCAAAACACAAGACTTGCCTGTTACCCGAGAACATGTTGGGAATATATGCACAGTGAAGAACTGTGATGATACAGCTATTGAGGATAGCACTAATACAGTTGTGAAATCAGAAGTTTCTAGTGTTGCACTGGACATTTCATCATCACTTATCCCTGCGGAGATGCAGCAGCCACTTAATGATTTTTTGAATGATAGATCATGGAATTATCAAGATCCAACAGGGAAGATTCAAGGGCCCTTTTCTATGTTGCAACTTTACAAGTGGAATGTTAGTGGTGGTTTCCCTCCAGATCTCAAAATATGGAGGATAGGTGAGAAACAGGATAACTCTATACTGTTAACCGATGCACTTAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAACCAGTTGCTCTCTCTAGGGGTCAGTGTTACATCAGATAAGAAAGATAATAGTCAGGATGCTGGGAAGAATATAGTGAAGAATGTAATTTCTGCAGATGGGCAAATTATTGAACAGAGCAAGGAACAAAAAGTGGATAATACCTCTACCCAGTCTGATGGTAAAGATGAGCCTGTTAGGAGCAATGGATGGCTTGAGCCGCTGCATTTATACCCTTCACCATTGCCAACTACCATTCCTGAGAAATTGAATGAGAATGCTTCTGATAAATTAAGGAAAGGTCATGGGATTGTGCGAAACTCCCAAGATAATGGAAATAATGGCTCAAACAGGACATTGGATGGGCAGAGTAATAGTGGACAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGGACAGACCTGGAGGCACCCTAATGTTAATAGTTCTTCCGATTGTTTGGTTACCACGTCAGTTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACCGACCTGGAGACACCCTAATGTTAATAGCTCTTCTAATTGCTTGGTTACCACGTCAGCTCATGTTTCTGGTACAAAGACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGTCACCCTAATATAAATAGTTCTTCCGATTGCTTGGTTAACACACCAGCTCATGTTTCTGGTACGAAAACATCACCACATAAGCTGGGCTTTGATTTGCATAATCCTCCTTCCCCTCCGGCTTGTAATACATCTTCTGGACAGACCTGGAGACACCTTGATATAAATAGTTCTTCCAATTGTTTAGTTACCCCATCAACTCATGTTTCCGGTACAAAAACATCACCGCAGAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAACATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTCGACGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCTTTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGATGATCTGACTGAAGGTTCTAAAAATGATTGTCTCAGCTTTGTTGCAGACCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCGACAGTTGCAGAAGAACCATTACGGCAAGCAGATGTACATCACCATCATCAAAGAATTTCCGCAGAGCTTTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACACAAGTACTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCAACTGTTGTTCCATCTCCAGCAACCTTGGGCCTGGCTGTAGACACGACTTGGAGACTTGGGCTAGAGAGTACACCCTTGGGATGGAGTGGAATAGATCAAGCAAATGCAAATGTGGGTTGGGGGGTAGGACAAACAGCAGTGCAGGAAACAAGGAGCTCAAATTCTTACACTTCTGTGGTAACTCCAGGTTTTGGGGATAGCCAAACAAGATATGGCAGTGATCGTTTTTCTGTGCCCAGAGATCGGGGTTCTCAAGGTCATGCTAGGGAATCCGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCCTCGTATGGTGTTGGGAATGGAGGCTCATATAGGCCTGTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 4296 0.4288 MDHPLHPLPEPAPNTARGFEDSRLVGPPLAPAGYADVAQKDVNSSVPNLEVAVVEGAVLKRKRGRPAKGAPKVAPLVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCIKRDEAFFRSKARWNCGWHICSACQKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTIMLIERSVQGNKEMCEVDFDDKGSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKGVAPMSYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLGKGDFLDRIGSGGDRDMSLPECTKWASKELLEFVSHMKNGDTSLLSQFDVQNLLLEYVTKNNLRDPQQMSEIVCDSRLLNLLGKARVGQIEMLKLLESHFLLKDNGPAENTFGAGIINTVASEGEAIDNYNKQLMLVNDKRCKTHNKADVLVPLNNPDAYAAIDVHNLNLIYLRRCLMENLTEDIEKIHDKVVGSFVRIRISCSDQKQDMYRLVQVVGTSKVAEPYKIGTRTTNIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSNRLTVGEILNKALTLQAIRVNDLLEAEILRLSHLRDRASEKGHRKELKEYVEKLHLLNSPEEHQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKQDNNIFPKYIVFDRRERGSFFPRISNGVFNDEGGKTQDLPVTREHVGNICTVKNCDDTAIEDSTNTVVKSEVSSVALDISSSLIPAEMQQPLNDFLNDRSWNYQDPTGKIQGPFSMLQLYKWNVSGGFPPDLKIWRIGEKQDNSILLTDALSGKCSKNVSLPFNNQLLSLGVSVTSDKKDNSQDAGKNIVKNVISADGQIIEQSKEQKVDNTSTQSDGKDEPVRSNGWLEPLHLYPSPLPTTIPEKLNENASDKLRKGHGIVRNSQDNGNNGSNRTLDGQSNSGQSYQKPSDSEENSGQSSGQTWRHPNVNSSSDCLVTTSVHVSGTKTSPHKLGFDLHNPPSPPACNTSSGPTWRHPNVNSSSNCLVTTSAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPNINSSSDCLVNTPAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHLDINSSSNCLVTPSTHVSGTKTSPQKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESFGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDAGKGDALSSTGDLNLPSQPTVAEEPLRQADVHHHHQRISAELSSRSSKVEVGTKNTSTSGNQWDSGSENSTVVPSPATLGLAVDTTWRLGLESTPLGWSGIDQANANVGWGVGQTAVQETRSSNSYTSVVTPGFGDSQTRYGSDRFSVPRDRGSQGHARESGFGRSRIAFNRQPSYGVGNGGSYRPVPKGQRVCKFYESGYCKKGASCDYWHP* 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1152 1431 Gene3D - 445 574 IPR036128 GO:0003677
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 854 898 - -
Pvu2g1152 1431 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 13 1431 - -
Pvu2g1152 1431 SUPERFAMILY CCCH zinc finger 1406 1430 IPR036855 GO:0046872
Pvu2g1152 1431 CDD GYF 751 806 IPR003169 GO:0005515
Pvu2g1152 1431 Gene3D SWIB/MDM2 domain 296 389 IPR036885 -
Pvu2g1152 1431 Pfam SWIB/MDM2 domain 309 382 IPR003121 -
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 1356 1382 - -
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 913 967 - -
Pvu2g1152 1431 CDD PHD5_NSD 86 131 - -
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 1 23 - -
Pvu2g1152 1431 SMART rtf1 444 554 IPR004343 GO:0003677
Pvu2g1152 1431 SUPERFAMILY GYF domain 745 804 IPR035445 -
Pvu2g1152 1431 Coils Coil 578 598 - -
Pvu2g1152 1431 SMART gyf_5 752 807 IPR003169 GO:0005515
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 625 653 - -
Pvu2g1152 1431 Pfam GYF domain 754 795 IPR003169 GO:0005515
Pvu2g1152 1431 ProSiteProfiles Plus3 domain profile. 444 577 IPR004343 GO:0003677
Pvu2g1152 1431 ProSiteProfiles SWIB/MDM2 domain profile. 301 384 IPR003121 -
Pvu2g1152 1431 SUPERFAMILY SWIB/MDM2 domain 306 383 IPR036885 -
Pvu2g1152 1431 CDD SWIB-MDM2_like 307 382 - -
Pvu2g1152 1431 ProSiteProfiles GYF domain profile. 751 805 IPR003169 GO:0005515
Pvu2g1152 1431 SUPERFAMILY Plus3-like 445 573 IPR036128 GO:0003677
Pvu2g1152 1431 ProSiteProfiles Zinc finger PHD-type profile. 84 150 IPR019787 -
Pvu2g1152 1431 Pfam Plus-3 domain 449 552 IPR004343 GO:0003677
Pvu2g1152 1431 SUPERFAMILY FYVE/PHD zinc finger 81 131 IPR011011 -
Pvu2g1152 1431 ProSitePatterns Zinc finger PHD-type signature. 87 147 IPR019786 -
Pvu2g1152 1431 ProSiteProfiles Zinc finger C3H1-type profile. 1406 1431 IPR000571 GO:0046872
Pvu2g1152 1431 SMART PHD_3 86 132 IPR001965 -
Pvu2g1152 1431 Gene3D - 753 809 IPR035445 -
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 1248 1291 - -
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 916 967 - -
Pvu2g1152 1431 MobiDBLite consensus disorder prediction 1260 1291 - -
Pvu2g1152 1431 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 13 1431 - -
Pvu2g1152 1431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 174 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1152 Pvu-Chr2 22711525 22718415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1152 84 167 PHD Transcription Factor Family AT5G36670 32.558 2.35e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu2g1152 Plus-3 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1152 - - vun:114173625 2660.56