Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1146 ATGGACGTGTGGCCGAAACTGGTTCTTCAGTGTGAAGGCCCGGAAAATGTGTTTGGCGTTAGTGATAATGACAGAGGTGGCAGAGAGGGTGGGTTCAAGAAACTTCCGAGAGGGAAGAAGCGAGGGAGGGAAGAGAGAAGGGAAAATTTTAGCAATAATAAAAGTAATATCAACAGATCTCACTCTCGTTTGCCCAAAGCCAAAATTCAAAGAAGGAAAGAAAGAATGGTTGATTTCAGCGGCGATGAAACTGCTCCCTTCTTCGGCTTCCTGGGCGCCGCGGCGGCCCTCGTTTTCTCCTGCATGGGTGCGGCGTACGGCACGGCTAAGAGCGGCGTCGGTGTTGCCTCCATGGGCGTCATGAGGCCGGAGTTGGTGATGAAATCGATTGTGCCGGTTGTGATGGCGGGAGTGCTGGGCATCTACGGCTTGATCATCGCGGTCATCATCAGCACGGGCATTAACCCTAAGGCAAAATCCTACTATCTCTTCGACGGCTACGCTCATCTCTCTTCTGGTCTCGCTTGCGGTCTCGCGGGTCTCTCCGCTGGCATGGCCATTGGCATCGTTGGCGACGCCGGTGTTAGAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTGATTCTCATCTTTGCTGAGGCACTGGCCTTGTATGGTCTCATTGTTGGCATCATCCTCTCTTCCCGCGCTGGCCAATCCAGAGCTGATTAG 720 0.5292 MDVWPKLVLQCEGPENVFGVSDNDRGGREGGFKKLPRGKKRGREERRENFSNNKSNINRSHSRLPKAKIQRRKERMVDFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1146 239 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 78 239 - -
Pvu2g1146 239 PRINTS Vacuolar ATP synthase 16kDa subunit signature 104 128 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pvu2g1146 239 PRINTS Vacuolar ATP synthase 16kDa subunit signature 130 154 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pvu2g1146 239 PRINTS Vacuolar ATP synthase 16kDa subunit signature 181 207 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pvu2g1146 239 PRINTS Vacuolar ATP synthase 16kDa subunit signature 208 231 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pvu2g1146 239 CDD ATP-synt_Vo_c_ATP6C_rpt2 163 230 - -
Pvu2g1146 239 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 78 239 - -
Pvu2g1146 239 MobiDBLite consensus disorder prediction 18 67 - -
Pvu2g1146 239 Gene3D - 85 236 IPR035921 -
Pvu2g1146 239 SUPERFAMILY F1F0 ATP synthase subunit C 88 151 IPR035921 -
Pvu2g1146 239 SUPERFAMILY F1F0 ATP synthase subunit C 161 230 IPR035921 -
Pvu2g1146 239 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 87 195 IPR011555 GO:0033179|GO:0046961|GO:1902600
Pvu2g1146 239 Pfam ATP synthase subunit C 171 229 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pvu2g1146 239 Pfam ATP synthase subunit C 91 150 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pvu2g1146 239 CDD ATP-synt_Vo_c_ATP6C_rpt1 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1146 Pvu-Chr2 22572598 22576392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1146 76 239 Primary Pumps ATPases(2) AT2G16510 98.171 6.20e-110 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1146 K02155 - gmx:100812380 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1146 2 22572598 22576392 Pvu3g2681 3 48835763 48838245 PCT