Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1145 ATGCGCATTTCAGCGGTCCTCCCTTCCTCTTTTATATTCTTTACAAATTCCTCACTCCTAACGGATTTTTTCTCACATTCTTCTCTCTCCTTCTCTCATCAATCATCATGTTGTTTTCTTCTACCAAACTACCCTAGCTTCTTCATTCTTCATCTCCACCTCTTCATTAACTGCACTTCCTTTAACCAACTATCTCATCAGCCTCTACTTGTCCGTTTCTCACCCTTGCCCAAACACAGGGCTTATGTACCAGAATTTGCTATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTGAGGAAGAAGGTGGCTTCCCAAAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGATAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCGGGGTTTTGGAAAGCTACAGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTAATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGATTGGATCATGCACGAGTATAGACTTGAATCGGATGAGAATGGACCTCCACAGGAGGAAGGATGGGTTGTGTGCAGAGCCTTCAAGAAAAAAACCACTGGACAAACAAAGACTACTGAAGGATGGGACTCAAGCTACTTCTTTGAGGAAGCAAGTGGGTTAAGCACTGTGGTTGATCCAATTGATCTCATTTCAAGGCAGTCTCACAGCTTTTTAGCTCAAAATTTCATGTGTAAGCAAGAGATAGAAGCAGATAACTTGAGTTGCATGCTCCAAGATCCATTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCATTAGTGAAGAGGCCAAGCACAGTGTCACTAGTATCAGACAATAACGAAGATGAAGACATTCAAAACAGGTTATCCAACAACAACACAAAGAAAGTCACTGATTGGAGAGCTCTTGACAAGTTCGTAGCCTCTCAACTGAGTCAAGAAGACACGCTTGAAACCAATGGACTCTCAAGCTTTGAACCCCATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAAGCTAAGCCCGTTTCTGAACACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1275 0.4322 MRISAVLPSSFIFFTNSSLLTDFFSHSSLSFSHQSSCCFLLPNYPSFFILHLHLFINCTSFNQLSHQPLLVRFSPLPKHRAYVPEFAMMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTTEGWDSSYFFEEASGLSTVVDPIDLISRQSHSFLAQNFMCKQEIEADNLSCMLQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDIQNRLSNNNTKKVTDWRALDKFVASQLSQEDTLETNGLSSFEPHDNHDMALLLLQSSRDEGNKLSPFLNTSSDCDIGICVFEK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1145 424 ProSiteProfiles NAC domain profile. 96 245 IPR003441 GO:0003677|GO:0006355
Pvu2g1145 424 Gene3D NAC domain 105 249 IPR036093 GO:0003677|GO:0006355
Pvu2g1145 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 92 403 - -
Pvu2g1145 424 SUPERFAMILY NAC domain 88 245 IPR036093 GO:0003677|GO:0006355
Pvu2g1145 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 92 403 - -
Pvu2g1145 424 Pfam No apical meristem (NAM) protein 97 224 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1145 Pvu-Chr2 22556838 22561334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1145 89 423 NAC Transcription Factor Family AT2G18060 65.489 1.03e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu2g1145 NAM 8.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1145 - - pvu:PHAVU_002G110900g 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1145 2 22556838 22561334 Pvu3g2682 3 48840801 48844236 PCT