Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1144 ATGTCTGCCGTTAACGAAGAAGCTCCTGCTCCCGTTCTGGAAAAGTCACTGGAGAAGGTGAAGGCGGCCAAGGAGAAAAAACCTAAGGCTCCTAAAGAGAAGAAGACGAAACAGGCAAAAACTGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGGTGGCGCTGAATGAGAAGGGAGGATCGAGCCCATATGCCATAGCGAAGTACATGGAAGAGAAGCACAAGGCGGTGCTCCCGGCGAATTTTAAGAAGATTTTAGGTCTGCAATTGAAAAACCAAGCCACTAGAGGAAATCTCGTGAAGATCAAGGCCTCCTACAAGCTTTCTGAAACCACAAAGAAAGATAAGGTGGAGACAAAGGTGAAGGCTGAGAAAAAAGAATCACGTCCGAAACGTGACAGTAGCGCAACGACCTCTGCGCCGAAGAGCAAGAAGACAACCGAGGCGGTTAAAAAGGGCGGGAAGAAGGTTGGGGCGAAGAAGAGTAAGAAGGTATCAACTCCTGCGAAGCCTAAACAGCCCAGATCCATTAGGTCTCCTTCCAAGAGGACCCGGAAGGCTGCAGCGGCCTGA 582 0.4914 MSAVNEEAPAPVLEKSLEKVKAAKEKKPKAPKEKKTKQAKTASHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQATRGNLVKIKASYKLSETTKKDKVETKVKAEKKESRPKRDSSATTSAPKSKKTTEAVKKGGKKVGAKKSKKVSTPAKPKQPRSIRSPSKRTRKAAAA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1144 193 SUPERFAMILY "Winged helix" DNA-binding domain 40 119 IPR036390 -
Pvu2g1144 193 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu2g1144 193 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu2g1144 193 PRINTS Histone H5 signature 128 142 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu2g1144 193 PRINTS Histone H5 signature 166 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu2g1144 193 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g1144 193 PANTHER HISTONE H1 15 192 - -
Pvu2g1144 193 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g1144 193 MobiDBLite consensus disorder prediction 1 46 - -
Pvu2g1144 193 MobiDBLite consensus disorder prediction 179 193 - -
Pvu2g1144 193 MobiDBLite consensus disorder prediction 113 136 - -
Pvu2g1144 193 Gene3D - 38 135 IPR036388 -
Pvu2g1144 193 MobiDBLite consensus disorder prediction 12 29 - -
Pvu2g1144 193 CDD H15 41 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g1144 193 PANTHER HISTONE H1 15 192 - -
Pvu2g1144 193 Pfam linker histone H1 and H5 family 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g1144 193 MobiDBLite consensus disorder prediction 113 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1144 Pvu-Chr2 22515063 22516076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1144 36 115 Single Myb Histone (SMH) Gene Family AT1G49950 32.184 1.45e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1144 K11275 - gmx:100500169 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1144 2 22515063 22516076 Pvu2g1144 2 22515063 22516076 ECH