Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1141 ATGAGTGACAAAGAAAAGTTTGAGGTGGATAGAAGCGAGGATCCTATGGGTTATTCTAGTGGTATGCACTCGGATTGGAGATTTGGGGGTGCAAATCTGGCAAACTCTTCTGCTGGTTTGGTTGCCATGGGAAATTCTATGAATGCCAGCAGAGGGGATTTGATTGGTTCGTCTTCATGTTCCTCCGCTTCAATGGTGGACTCTTTTGGTCCAAGCTACTGGGACAACTCCACCGGCTCCCAAAACATGGGATTTTGTGACTTTAATGTCCACAACAATGGGGGTTCTTCAAATACTGCCGGAATAAGAAAAGATGGCTTTGGCTTTGGAAGAGTAGGTCAGGATCATCCTGGAACACTTGATATGGCTTGGAATCCTGCTAATTCTATGTTACCAAATGGCCCAGGGATGTTTCCGCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTACTGATATGGTGAACTCATATGGTATTGCTCAATCAACAGGGGTTTATGGAGCAAGAGATGCTATTGCAGGCCATGGGTTGAAATCTGTAACTGGAGGGCAATCTCAAGGAGGTGATATGAATGTAGTTGAAGCTACTAAAGATTTGTCTCCATCTGTTGAGCATCTGGCTTCTAAAGGAAGCCCTCTCAAGAGTGATAAAAGAAGTGAAGGTCATACTATGTCTCATGATGATAGGAAGCTAACTCTTGTTAGGCCAGCTAATGAGTCAGATAGAGCTGAATCTAGTGATGATGATGGTGGTGGCCAGGATGATTCTCCAATCTTGGAAGGTGCTAGTGAAGAGCCTTCTTTCAAAGGGCTAAACTCAAAGAAAAGGAAAAGAAGTGGGCAGGATGCTGATAATGATATAGGCAATGGAGCTCCAGAAATTCCTAATGAAGCTACAAAGGACAACTCTGAGAATCAACAGAAGGTAGACCATCAACCAACTCCAGCAACCAAGTCTTCTGGGAAGAATGCCAAACTGGGGTCTCAAGCTTCTGATCCACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTTAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCGGGATGCAGCAAG 1185 0.4439 MSDKEKFEVDRSEDPMGYSSGMHSDWRFGGANLANSSAGLVAMGNSMNASRGDLIGSSSCSSASMVDSFGPSYWDNSTGSQNMGFCDFNVHNNGGSSNTAGIRKDGFGFGRVGQDHPGTLDMAWNPANSMLPNGPGMFPHSLSQFPTDSGFIERAARFSCFSGGNFTDMVNSYGIAQSTGVYGARDAIAGHGLKSVTGGQSQGGDMNVVEATKDLSPSVEHLASKGSPLKSDKRSEGHTMSHDDRKLTLVRPANESDRAESSDDDGGGQDDSPILEGASEEPSFKGLNSKKRKRSGQDADNDIGNGAPEIPNEATKDNSENQQKVDHQPTPATKSSGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1141 395 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 395 IPR024097 GO:0006355
Pvu2g1141 395 MobiDBLite consensus disorder prediction 226 265 - -
Pvu2g1141 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 394 IPR036638 GO:0046983
Pvu2g1141 395 MobiDBLite consensus disorder prediction 285 299 - -
Pvu2g1141 395 MobiDBLite consensus disorder prediction 217 353 - -
Pvu2g1141 395 MobiDBLite consensus disorder prediction 312 343 - -
Pvu2g1141 395 Gene3D - 353 395 IPR036638 GO:0046983
Pvu2g1141 395 PANTHER BHLH TRANSCRIPTION FACTOR 10 395 - -
Pvu2g1141 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 395 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1141 Pvu-Chr2 22466103 22468361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1141 56 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 40.456 9.25e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1141 - - pvu:PHAVU_002G1105000 800.816