Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1137 ATGCAGCGTGCAAGGAAATCGAAAACGGTTTCGTGGTCTCCTGGATTTCATCTTTCTCAGGAAAAAAATTTCACATCCGAGGATTGTCCTTCAAAAATTGGAAACAAATCTGAAGCTGATTTTCAAGGAAAGACAGTGTCCACATGCCCTTCAACCCTTGAATATGATGATTTGCCACCTGGATTTGAAGGATATCATTTCCAGAATCAATCAAACTCAGCATTTTCTTACATTAAATGGGAATGCCCTCCTTCGTTCGTTTTGAATAGTTGTTGGAGAGTTGCAGCTGGTGAACAAAGTGTGGAGAAATATGATGAGATGCTAAAAGAAATGAGAGTGTCTGAACCATATCAACCTTGTATTTCTGCTATTCCTCCAAGCCCTTTTGTTTCATTTAACGTGGAGAATGAATGCTACGAGGATAGTCTTACTCCTCTTATTCCCATTGAGGAATATGAATCAGTAACAGTAACAGGTATTAAACCTGATGTTTCTGTCACAGAACATGGAGACTCTCTCTCCAAACTGCAGACACAAAACACACAGCAATACATTCCACCAGCAACATCTTCGGAGGAAAATTTCGTTGCAGCTTCTATTGGTGCTGTTTTATCTGCCATCTTAAAAAGCATCGAGGAAGGAATCGTTGTGATTGATGTTGATTTTCTCCTTGAAATAGCTAATGACTCAATAATGATTAGGAAAATAATGGAAGAATATTCAACTACCACCACTGGGATGAGTACACCCTCAAGAACTGTGAGTGCAAGACAATTAACTCCATCAAATTCACTGTTGGCCCTCACCCCTGAAATATGTGAAATTCCATCTATTTCATTGCTGGCATATGCACATGATAATCATGTAACTGCAACTCCACTTTTTCCTTTGTCTGGGCCTGTATCTGCTCACACAACAACCATGACTCACTCAGTGGCAACAACAACTGCACCTCATGTGCACATTCCAGTGAAAGATATCAATTACTATAGAAACCTTGTTAGAAAATATGGTGGCATTAGTGAGCCAGACATGCAGAATCATAATTTCCAAGATTATAAACGAGCACGTGTGCTTAACCCAGAGGGAGTGAAAAGGAAAATTCAGAAATCATGCAAATACTATAAAACTTCAAGGGGTTGTGGCCATGGTTCCAGTTGCCGTTATCTGCATGATAAAGTGTGGAGAATGTAA 1194 0.3961 MQRARKSKTVSWSPGFHLSQEKNFTSEDCPSKIGNKSEADFQGKTVSTCPSTLEYDDLPPGFEGYHFQNQSNSAFSYIKWECPPSFVLNSCWRVAAGEQSVEKYDEMLKEMRVSEPYQPCISAIPPSPFVSFNVENECYEDSLTPLIPIEEYESVTVTGIKPDVSVTEHGDSLSKLQTQNTQQYIPPATSSEENFVAASIGAVLSAILKSIEEGIVVIDVDFLLEIANDSIMIRKIMEEYSTTTTGMSTPSRTVSARQLTPSNSLLALTPEICEIPSISLLAYAHDNHVTATPLFPLSGPVSAHTTTMTHSVATTTAPHVHIPVKDINYYRNLVRKYGGISEPDMQNHNFQDYKRARVLNPEGVKRKIQKSCKYYKTSRGCGHGSSCRYLHDKVWRM* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1137 397 ProSiteProfiles Zinc finger C3H1-type profile. 366 394 IPR000571 GO:0046872
Pvu2g1137 397 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 393 - -
Pvu2g1137 397 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1137 Pvu-Chr2 22409712 22415185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1137 78 173 Homeobox Transcription Factor Family AT4G02560 35.417 8.59e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu2g1137 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1137 - - vra:106776671 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2684 3 48873866 48881942 Pvu2g1137 2 22409712 22415185 PCT