Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1136 ATGCTTTCTGGGGCTCCTCGATCAAATCTCAGACAGGTAAAGTCATTCTTACGTGATGATTTCCCATCCAAAGATGACAAGGAATATGAAGATCCTCTTCTAGCAAAGACATTGCCATTATGGCCTTCAACTGCAGATGAATATGATGATTTTCCACCTGGTTTTGAAGGAAATCATTTTCTGAATCGATCAAATGACGAATTCTCTCGCCTTTCTCAAATTAAATGGGAACGTCCTCCTTCGTTTGCTTTGAATTCTAAGTGGAGAGTAGCAACGGGTGAAGAAAGTAGAGAGAGAAATGTTCAAAGTCTAAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCTCGTATTTCATCAATTCCTTCCAGCCCTTCGGTTTCTTTTGATGTGGAGATGGAATCTTATGATGATAGCCTCACTCCTCATGTCCCTCTCATTCCCATTGAGGAACTGGAATCGTTGCAAGATAGAAAACAAGATGTTACAGTCACAAAATATGCAGACTCTTCCTGCAAATTGCCGACACAGATATTGCAAAAATATATTCCGCTAGCAAGATCCTCTTCGGAGGTAGATTTATTTGCAGCTTATGCTACTGTTGCAGCTGCCATCATGAAAAGCAATGAGGAAAACTGCTTGATTGATATAAATTTCCTCCTTGAAACAGTAAATGACCCAATAAAAATTGGAAACTTAATTGAAGATTACATATCAGCCATTACCACCACCCCTTTTCATACACCTACAAGATCTCTGAGTATACCCACTTCTTGTAATGCCCCTGATATCTCAGCAGTTCCATTGACTACCCCTGCAAGCAAAGCAACTGCATTTGATCCATTGCTCTCCCCCACACCTGAAAAATCAACAATTTCATCTGTTTCATTAGAGACAACCACACTTGCAAGTGGATGTCCTTTGAAAAGTCCTGAATCTTCTAAAACAGAAACAATTAACACAGTAACGCAACCAGTGGTAAAGCGAGGAGCACCACTGGAAAGCCAAAGAAAGAGTTTGTCCAAACACTTGCAATCCAGTGCTAGTTCATTGTCTTCTCAACGCGGTGTTGTGAAAGATGTCAACTATTATCTAAATCTTGTTAGAGATCATGATAATTATAAGAAAGACATGCGCAGTCGTAATAATTTTCAAGATTCGAAAAAACCACGTAACAACACCACTAATCAGGAGGAGGCAAAATTCAAAATTCATAAACCATGCAAATATTTTAAAACTTCAAGGGGTTGCCGTAATGGTTCTAATTGTCGTCATCAGCACGAAATGTCAGTGTGGAGGATGTAA 1302 0.394 MLSGAPRSNLRQVKSFLRDDFPSKDDKEYEDPLLAKTLPLWPSTADEYDDFPPGFEGNHFLNRSNDEFSRLSQIKWERPPSFALNSKWRVATGEESRERNVQSLREMRVLEAVYPRISSIPSSPSVSFDVEMESYDDSLTPHVPLIPIEELESLQDRKQDVTVTKYADSSCKLPTQILQKYIPLARSSSEVDLFAAYATVAAAIMKSNEENCLIDINFLLETVNDPIKIGNLIEDYISAITTTPFHTPTRSLSIPTSCNAPDISAVPLTTPASKATAFDPLLSPTPEKSTISSVSLETTTLASGCPLKSPESSKTETINTVTQPVVKRGAPLESQRKSLSKHLQSSASSLSSQRGVVKDVNYYLNLVRDHDNYKKDMRSRNNFQDSKKPRNNTTNQEEAKFKIHKPCKYFKTSRGCRNGSNCRHQHEMSVWRM* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1136 433 SUPERFAMILY CCCH zinc finger 406 427 IPR036855 GO:0046872
Pvu2g1136 433 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 4 429 - -
Pvu2g1136 433 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Pvu2g1136 433 MobiDBLite consensus disorder prediction 373 399 - -
Pvu2g1136 433 MobiDBLite consensus disorder prediction 337 351 - -
Pvu2g1136 433 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 4 429 - -
Pvu2g1136 433 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1136 Pvu-Chr2 22388793 22390576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1136 73 144 Homeobox Transcription Factor Family AT4G02560 45.833 2.45e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu2g1136 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1136 - - pvu:PHAVU_002G110100g 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1136 2 22388793 22390576 Pvu2g1136 2 22388793 22390576 ECH
Pvu3g2684 3 48873866 48881942 Pvu2g1136 2 22388793 22390576 ECH
Pvu2g1136 2 22388793 22390576 Pvu3g2684 3 48873866 48881942 PCT