Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1122 ATGGGCATCTGTTTCTCCGCCACCAAAGTCAGCGGCTCCAACAGCAACAACGCCGGCGCCTCAAATCGAAACCGAAAATGGTCGGCTCCGATGACGGCGCAGGTGACGTTGCAGCCCCTGACGGCGCAAAAGCAACAGTCGTCGCACAAGCAACAGTCATCGCACAAGCAACAGTCGTCGCATGGTCAACGACGGCGCGTACCAGAGGATTCGAGGAAGAACCCACGCGCCAAGGAGAAAACGAGCGGGCGTCGCCAAGGGGGCAACCTCCCCTGCGGAAAACGAACGGATTTTGGGTACGAGAAAGACTTCGACAAGAAATTCTCGCTCGGGAAGTTGTTGGGACACGGCCAATTCGGTTACACCTACGTTGGGATAGACAAAGCAAATGGGGATCGCGTCGCCGTTAAGAGACTCGAGAAGAACAAGATGGTTCTCCCTATAGCAGTTGAGGATGTTAAGCGTGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAACGTGGTTCAGTTCTATAATGCTTTTGAGGATGATTCATACGTGTACATAGTTATGGAGTTATGTGAGGGCGGTGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTTCATCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACCAGAGAAGATTCACCATTAAAAGCTACCGATTTTGGTTTGTCTGATTTCATAAAGCCTGGGAAGAGGTTTCCAGACATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGAAAGTCAGGTCCTGAGTCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGTCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGACTTCCGGCGGAAACCATGGCCAACCATAAGCAACTCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCCCGAGCAAGATATACTGCTGCGCAGGCTCTATCACATCCATGGGTTAAAGAAGGTGGAGAGGCATTAGAGATTCCTATTGACATATCTGTCCTGAACAACATGCGACAGTTTGTGAGATATAGTCGGTTGAAACAGTTTGCACTAAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGACGTGGACAAAAATGGTTCTATTAGTCTAGAAGAGATGAGACTGGCTCTTGCTCAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTGCTAGAGATATTGCAAGCGATAGACAGCAACACAGACGGGCTAGTGGATTTCACTGAGTTTGTAGCAGCTACGTTACATGTACATCAGTTGGAGGAACATGATTCTTTTAAGTGGCAGCAACGGTCACAAGCTGCTTTTGAGAAATTTGACCTGGACAAGGATGGCTACATTACTCCAGATGAACTTAGAATGCATACGGGTTTGAGAGGGTCCATTGATCCATTGCTTGAGGAAGCCGATATTGATAAAGATGGAAAGATCAGCTTATCAGAATTCCGCAGACTTCTGAGAACTGCAAGCATAGGTTCTCGAAACGTGTTGAGCCCGAATCAGCTTCGTCGAAAGATGTAG 1710 0.4614 MGICFSATKVSGSNSNNAGASNRNRKWSAPMTAQVTLQPLTAQKQQSSHKQQSSHKQQSSHGQRRRVPEDSRKNPRAKEKTSGRRQGGNLPCGKRTDFGYEKDFDKKFSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKNKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFPDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNSAKDFVKKLLVKDPRARYTAAQALSHPWVKEGGEALEIPIDISVLNNMRQFVRYSRLKQFALRALASTLNEEELSDLKDQFDAIDVDKNGSISLEEMRLALAQDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSFKWQQRSQAAFEKFDLDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASIGSRNVLSPNQLRRKM* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1122 569 SUPERFAMILY EF-hand 397 550 IPR011992 -
Pvu2g1122 569 ProSiteProfiles Protein kinase domain profile. 108 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1122 569 ProSitePatterns EF-hand calcium-binding domain. 533 545 IPR018247 -
Pvu2g1122 569 MobiDBLite consensus disorder prediction 62 83 - -
Pvu2g1122 569 Gene3D Phosphorylase Kinase; domain 1 101 193 - -
Pvu2g1122 569 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Pvu2g1122 569 Pfam EF-hand domain pair 496 549 IPR002048 GO:0005509
Pvu2g1122 569 Pfam EF-hand domain pair 414 477 IPR002048 GO:0005509
Pvu2g1122 569 Gene3D - 387 478 - -
Pvu2g1122 569 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Pvu2g1122 569 CDD STKc_CAMK 107 367 - -
Pvu2g1122 569 Gene3D Transferase(Phosphotransferase) domain 1 194 386 - -
Pvu2g1122 569 PANTHER SERINE/THREONINE-PROTEIN KINASE 51 559 - -
Pvu2g1122 569 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Pvu2g1122 569 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Pvu2g1122 569 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 51 559 - -
Pvu2g1122 569 ProSitePatterns EF-hand calcium-binding domain. 503 515 IPR018247 -
Pvu2g1122 569 MobiDBLite consensus disorder prediction 1 94 - -
Pvu2g1122 569 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Pvu2g1122 569 SMART serkin_6 108 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1122 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Pvu2g1122 569 Gene3D - 394 548 - -
Pvu2g1122 569 SMART efh_1 524 552 IPR002048 GO:0005509
Pvu2g1122 569 SMART efh_1 494 522 IPR002048 GO:0005509
Pvu2g1122 569 SMART efh_1 415 443 IPR002048 GO:0005509
Pvu2g1122 569 SMART efh_1 452 480 IPR002048 GO:0005509
Pvu2g1122 569 SUPERFAMILY Protein kinase-like (PK-like) 106 381 IPR011009 -
Pvu2g1122 569 Pfam Protein kinase domain 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1122 569 MobiDBLite consensus disorder prediction 7 58 - -
Pvu2g1122 569 ProSiteProfiles EF-hand calcium-binding domain profile. 490 525 IPR002048 GO:0005509
Pvu2g1122 569 ProSiteProfiles EF-hand calcium-binding domain profile. 528 555 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1122 Pvu-Chr2 21995153 22001011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1122 1 562 EF-hand Containing Proteins AT2G17890 75.747 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu2g1122 Pkinase 4.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1122 K13412 - gmx:100805954 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1122 2 21995153 22001011 Pvu3g2694 3 48961700 48972324 PCT