LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g1105	ATGCTCATGGCATCTGCAGGAACAAGGAGTTTAGTTATGGCAGAAAACAAAGACGAAACCTATTCTGAAACTTCTGAATGTTCATCAGCCTTAACCATGCCAATGGCTACCAAGTGCAGATACTTGTTTCATAGATTATGCGGTTCTACCAATTCATGGAACAAAAGCACCCCCCCAAAAGGTCGAAGAATTTTCCACAGGGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCCATCTTGATAGGGCTTCTCACTATACTGACATGGCATTTCACGAAGATTTATACAGCAAAATCGCTTAACAGTTTGGCATATGGTTTGCGTTATGAACTCCTGCAACGCCCAGTTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAGCTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCGACTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCAGTAACATGGGCTTTATTTGCTAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAAGAATGGATTTGTGCACGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGAGCCAGCAACTCTAATGAGGTCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAGCCCTTCGTGGAAACTATTCAGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATAGGAAAAGCTATGAAAATTGCGCCTGAAGACTTGATCAACATAGCTGGCTTTTCCCAAGTACCTGATGGTGTAGCTTCTTGGCATGTTTCCGTAAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACCATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGAGAGCTTGTTGAGTTGCACAGTGGTCATATGTACTTGACTTCCCAAGAGGGTTATTTACTGGCAACTTCCACAAGTGCACCTCTTCTGGCAAATTCAACCAAGCCTAAGCTTAAGATGGCCGTTGACTGTGAAGATGACATAATTCGACAGGGAGCTGAGTGGTTGCAGAGAACTTATGGGAACAATTTCCCTCCAAGTCACGAGGTGCATGTAGAAAATGTCAAGCTAGGCCAAAAGACATATTACATTGACTCGTTCTTCCTACATTTGAAGAGACTTCCTTTGGTAGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTAGACGAAAGAGCCTTCAAAACGCTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTTTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTTGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAATTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATATTCAACCGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACTTGTCTGATGATATGCCAAAGATCGTCCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTGTTCTGCGAGGATGGAGTGAAATCCCAAATTCTTCCGTTGGCAGTCCAAATTTTCCTCTTGACCAGAAGAAATTATGGAGTTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAGGCATCTATAAAAGACAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACGGGCTGTGGTATTGACCCAAGCAAGTGGGATTCCGTGTTCGAAAGCTTTGAGCAAGCTGATCCATCTACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAACAAGATGGGTGGGCACATCAAGGTAGTAAAAAAGGAGGGCGCAGGAACACTGATGCGATTATGCTTGCTTCTCAGTGCGCCCATGGATATCACAGAACAACAGTGTGCAGTAGATTTGACAGACAGTGGCTTAGTGGTACTGCTCGGCTTACATGGCAACATGGGTCGATTAATTACATCCAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGCTAGAAGTTCAGTGCATAATACTGACTTTGATGCACACTATTCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATACGAGACATGAGGAACCCAGTATTTGTCATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCATAGGTACTTTGGTAGAGCAAAGTTCCTATGGATGCTAAATCATGACACTTCCAATAACATAAAGATGGAGCTCCGTAGGAAAGGGCATATACTGATGGTCAACAAACCCCTTTACAAAGCAAAAATGATCCATATTTTGGAATCCGTCATAAAGGAGAGAAATTTTGAGCTACAAAAGAAAAACATGATTGTTCCAAGGACAGCAATGAAAGAGGGAGATTTACACGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACCTATCTGACATAGCTGGTTCTAATCCTGTTAGTGCTAATGGAGATAAACCAGTTGAGAAGCTAGACAAATCTCATCCATCATCACCATACCATATGAATAACTGCCTAGATAGATTAACCAATGCAAATGAATGTTTGGAGGAAAATAATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCTCCAATTATGCCACTGAAGACAACCAACCTAAATCACTGTCTACCAAAGAATCACCATCCATTTCAACAGGAGATCAGGATGAAGATTCTGAATGTAGGGAAACACATAGGGTCACCAGCTCAAGTAAAGCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCGGTACTTCAAAGGGTTGCAACCATAATGCTTGAGAAAATGGGAGCAGATGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAGTTGCATGTTCACTGCTGAAGATTGTAGAAGGGAATCACTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTGACTAGCCGTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTACGAGGCAACCAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAGGCCAAATGCCTGGATGTGGGCATGGATGCTTATTTGACAAAGCCAATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGA	3783	0.4148	MLMASAGTRSLVMAENKDETYSETSECSSALTMPMATKCRYLFHRLCGSTNSWNKSTPPKGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVHAFHRDLKDNNTFYIYSDLSNYSMGASNSNEVNSVSTHQAWDDKALRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGFSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPKLKMAVDCEDDIIRQGAEWLQRTYGNNFPPSHEVHVENVKLGQKTYYIDSFFLHLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSEIPNSSVGSPNFPLDQKKLWSLQKCREKPNANHSKKASIKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGHIKVVKKEGAGTLMRLCLLLSAPMDITEQQCAVDLTDSGLVVLLGLHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHARSSVHNTDFDAHYSAKEELKSKLLNIRDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFLWMLNHDTSNNIKMELRRKGHILMVNKPLYKAKMIHILESVIKERNFELQKKNMIVPRTAMKEGDLHEFLEIDSTHFDAASSDDSDLSDIAGSNPVSANGDKPVEKLDKSHPSSPYHMNNCLDRLTNANECLEENNLRKEESSSPSSNYATEDNQPKSLSTKESPSISTGDQDEDSECRETHRVTSSSKAVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVEALSCMFTAEDCRRESLQKERNTRSQTEILTSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSLHIPIVALTAHAMSCDEAKCLDVGMDAYLTKPIDFKMMVSTILSLTKTTS*	1261

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g1105	1260	Pfam	His Kinase A (phospho-acceptor) domain	517	582	IPR003661	GO:0000155\|GO:0007165
	Pvu2g1105	1260	SMART	REC_2	1110	1252	IPR001789	GO:0000160
	Pvu2g1105	1260	Gene3D	-	504	583	-	-
	Pvu2g1105	1260	ProSiteProfiles	Response regulatory domain profile.	1111	1256	IPR001789	GO:0000160
	Pvu2g1105	1260	PRINTS	Bacterial sensor protein C-terminal signature	706	720	IPR004358	GO:0016310\|GO:0016772
	Pvu2g1105	1260	PRINTS	Bacterial sensor protein C-terminal signature	724	734	IPR004358	GO:0016310\|GO:0016772
	Pvu2g1105	1260	PRINTS	Bacterial sensor protein C-terminal signature	741	759	IPR004358	GO:0016310\|GO:0016772
	Pvu2g1105	1260	MobiDBLite	consensus disorder prediction	1051	1077	-	-
	Pvu2g1105	1260	PANTHER	TWO-COMPONENT HISTIDINE KINASE	35	1257	-	-
	Pvu2g1105	1260	MobiDBLite	consensus disorder prediction	1046	1101	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g1105	Pvu-Chr2	21585247	21592897	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu2g1105	34	1260	Histidine Kinase Gene Family	AT2G17820	63.878	0.0	1567

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Pvu2g1105		HATPase_c	1.5e-23	CL0025

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g1105	-		-	vra:106777758	2322.74

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu2g1105	2	21585247	21592897	Pvu2g1105	2	21585247	21592897	ECH
	Pvu2g1105	2	21585247	21592897	Pvu3g2723	3	49180437	49187253	PCT

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