Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1092 ATGACTCTCAAAGGCTTAGTCTCACTTGTCACCAATTTAATTGGCCTAGCTGAGGGACAAAGGAACAATGATGCCCCTTTACCTTCTTACATGATTCTCCTTCAAAGTAACAAGCAGCAACCATCTGAATCTGCAGCAGCAGCAGCAGCAGCAGCATCCAACTTCAATGAAGATTGCTGGTGTTGTGTGTGCTTGTCAAGGTTAAAGGCCAGAGATGAAATTCGTGTTCTTCCTTGCTCTCACAAATTCCATAAGATTTGTGTAAATAGATGGCTTAAGGGTCACCACAAAACCTGTCCACTCTGCCGTTTCTCTTTGGGAGCCGAGGACAAGTCTCATCGTGCTGAAATGTTCACTGAAGAGATGTTGATGTGGTTTTCTTCTTTCCATATAGCTGGTATGTAA 405 0.4346 MTLKGLVSLVTNLIGLAEGQRNNDAPLPSYMILLQSNKQQPSESAAAAAAAASNFNEDCWCCVCLSRLKARDEIRVLPCSHKFHKICVNRWLKGHHKTCPLCRFSLGAEDKSHRAEMFTEEMLMWFSSFHIAGM* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1092 134 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Pvu2g1092 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Pvu2g1092 134 Pfam Ring finger domain 61 103 IPR001841 -
Pvu2g1092 134 SMART ring_2 61 102 IPR001841 -
Pvu2g1092 134 PANTHER TARGET OF ERK KINASE MPK-1 8 119 - -
Pvu2g1092 134 PANTHER GB|AAF27103.1 8 119 - -
Pvu2g1092 134 CDD mRING-H2-C3H2C2D_ZSWM2 61 103 - -
Pvu2g1092 134 SUPERFAMILY RING/U-box 55 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1092 Pvu-Chr2 21312952 21315712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1092 37 112 C3H Transcription Factor Family AT5G45290 37.363 3.44e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1092 - - gmx:100809233 236.498