Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1074 ATGAATCGAAGGTCAATTCGTTGCTCTGTGATTCGACAAAACAAAACCCTTACCCTTCGTTGTCTCATTCGTGACTCTTCTTCATCTCCGATCAAGAGCTCTATACTCGGAGATCTTGTTGAAATGGCCGATTCTCCACCAAGAAGGAATTCACGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCGAGGTCAAGGTCTAGATCTAGGCCTAGGTCCCGATCTAGATCATTTGAAAAACAAAGGCCACGATCCCGCTCAAGAAGTCGTGGAAGATCAAGATCAAGAAGTAATGAAAGGACGGAGGCTAAAAATTCAGGGACTACACTTTACGTCACTGGACTATCTTCAAGGGTCACTGAGAGAGACCTGGAGGAGCATTTCTCTAAGGAGGGAAAGGTTTCTTCTTGTTTTCTTGTGGTGGAGCCTCGTACTCGCATTTCACGAGGTTTTGCTTTTATTACAATGGATAATGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGGAAGCGTGCAAGAACTCCTACACCTGGACACTATCTTGGCCTGAAAAGTACTAGAGACTATGGATTTCGCGGTGACCGTGGAAGGTATAGAGGTGGTGGATCTGGTCGTGATGATCATGCATATCGTGGAGAGCGTGGAAGATCTCCAAGGCGCTCACCTTATCGAGGTGGTGGTAGAGATTATTCACCAAGGCATTCACCGCCACCCTATGCTGGAAGAACTAGGAGGGATAGGTCCAGGTCACTTCCATACTCTCCGTATGGTAGTCCAGACAGGAGGTTTGCTCGTGGATCTAGGTGA 858 0.4732 MNRRSIRCSVIRQNKTLTLRCLIRDSSSSPIKSSILGDLVEMADSPPRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSFEKQRPRSRSRSRGRSRSRSNERTEAKNSGTTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFITMDNVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGFRGDRGRYRGGGSGRDDHAYRGERGRSPRRSPYRGGGRDYSPRHSPPPYAGRTRRDRSRSLPYSPYGSPDRRFARGSR* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1074 285 PANTHER RNA RECOGNITION MOTIF 43 281 - -
Pvu2g1074 285 SUPERFAMILY RNA-binding domain, RBD 103 218 IPR035979 GO:0003676
Pvu2g1074 285 MobiDBLite consensus disorder prediction 37 114 - -
Pvu2g1074 285 SMART rrm1_1 109 182 IPR000504 GO:0003723
Pvu2g1074 285 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 281 - -
Pvu2g1074 285 CDD RRM_RBMX_like 107 186 - -
Pvu2g1074 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 179 IPR000504 GO:0003723
Pvu2g1074 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Pvu2g1074 285 MobiDBLite consensus disorder prediction 205 244 - -
Pvu2g1074 285 Gene3D - 44 192 IPR012677 -
Pvu2g1074 285 MobiDBLite consensus disorder prediction 184 285 - -
Pvu2g1074 285 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1074 Pvu-Chr2 21000211 21003055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1074 81 190 Eukaryotic Initiation Factors Gene Family AT1G49760 29.091 6.88e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1074 K12897 - gmx:100527350 340.502