Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1037 ATGCAGGCCTCCTCCATTCCTTCTCTGTCTCTTCTTCCTTTCACTTTTCTTCACTTTATTTTCAGCTATAAATCCTTCTCCTTCTTGCTCTGCCATTCTCATGTCCTAATAGAACTTCACAACAACAAGGGAAACATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTCGGAGAAGATGTGCTCAAGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAACCCCACAAGTTTGCAAATGTCCACAGAGTCTTTGGTGCCAGCAATATCAACAAGATGCTTCAGGTTCATTCTCTTTGCTGCTTATATTAA 339 0.4336 MQASSIPSLSLLPFTFLHFIFSYKSFSFLLCHSHVLIELHNNKGNMKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNINKMLQVHSLCCLY* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1037 112 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 46 105 - -
Pvu2g1037 112 ProSiteProfiles LOB domain profile. 57 112 IPR004883 -
Pvu2g1037 112 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 46 105 - -
Pvu2g1037 112 Pfam Lateral organ boundaries (LOB) domain 58 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1037 Pvu-Chr2 20009896 20010263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1037 46 104 AS2 family AT1G31320 88.136 7.65e-35 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu2g1037 LOB 4.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1037 - - pvu:PHAVU_002G100500g 239.965