Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1036 ATGGCAAATCCAACACCAAAACCTATTCCCACTTTCATCCTTCATCTCATCTTATGTTGCTGTTTTTGTTCATCCCTTGTTATGGGAGCCACTTACAATGTGGTTAGCTTTGGTGCCAAATCAGACGGTAAAACAGACTCAACCACGGCCTTCCTCAATGCATGGGCCAAGGCTTGTGCTTCCACCAACCCTTCCTCGGTTTACGTGCCGCAAGGGAGGTTCTTGCTCAGAAGTGCAACCTTCGGTGGTCAATGTCACAACAAAGCTATCACCTTTACCATTGATGGCACTTTGATGGCTCCTTCTGATTACAGGGTCATCGGAAATGCCGGTAACTGGTTGCACTTCCAGAGTGTGAACGGGGTTTCCATTCGCGGTGGTGTGTTGGATGGTCAAGGCACAGCCCTGTGGAGTTGCAAGAACTCCGGCAAAGGAAACTGCCCCATCGGTGCCACGACATTGGCTTTCACCAACTCGAATAACATCGCAATTAGTGGGTTAACCTCATTGAACAGTCAAATGTTCCACATAGTACTCAACGGATGCCAGAATGTGAAGATGCAAGGAGTGAAGGTCATTGCCGACGGAAACAGCCCTAACACCGACGGCATCCATGTTCAAATGTCCTCCTACGTCACCATCCTCAACTCCAAAATTCGAACCGGAGATGATTGCATCTCCATAGGCCCTGGAACCACTAACCTGTGGATTGAAAACATTGCATGTGGACCAGGACATGGAATAAGCATTGGGAGCTTGGGGAAAGTTTCGAGAGAAGCTGGTGTACAAAATGTGACAGTTAAAACGGTTACCTTCACTGGGACTCAAAACGGTGTTAGAATCAAGACCTGGGGGAGACCCAGCGACGGCTTTGTGAGGAACGTTCTTTTCCAAGATGCTATCATGGTCAATGTCGAAAACCCCGTTATAATTGACCAAAATTACTGCCCAGATAACAAGGGCTGCCCGGGTCAGGCATCTGGAGTGAAAGTGAGTGATGTGACATACCAAGACATTCATGGAACATCTGCGACCCAAGTTGCTGTGAAATTTGATTGCAGTTCCAAGTATCCATGCAGCAGGATACGGTTGGAGGATGTGAAGCTCACATATAAGAACCAACGTGCTCTATCTTCCTGCAACCATGCAGATGGAGCGGCGTTGGGTTCAGTTCAACCCGAGAGTTGCTTTTAG 1194 0.4807 MANPTPKPIPTFILHLILCCCFCSSLVMGATYNVVSFGAKSDGKTDSTTAFLNAWAKACASTNPSSVYVPQGRFLLRSATFGGQCHNKAITFTIDGTLMAPSDYRVIGNAGNWLHFQSVNGVSIRGGVLDGQGTALWSCKNSGKGNCPIGATTLAFTNSNNIAISGLTSLNSQMFHIVLNGCQNVKMQGVKVIADGNSPNTDGIHVQMSSYVTILNSKIRTGDDCISIGPGTTNLWIENIACGPGHGISIGSLGKVSREAGVQNVTVKTVTFTGTQNGVRIKTWGRPSDGFVRNVLFQDAIMVNVENPVIIDQNYCPDNKGCPGQASGVKVSDVTYQDIHGTSATQVAVKFDCSSKYPCSRIRLEDVKLTYKNQRALSSCNHADGAALGSVQPESCF* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1036 397 Pfam Glycosyl hydrolases family 28 59 382 IPR000743 GO:0004650|GO:0005975
Pvu2g1036 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Pvu2g1036 397 Gene3D - 24 395 IPR012334 -
Pvu2g1036 397 SMART pbh1 262 283 IPR006626 -
Pvu2g1036 397 SMART pbh1 232 252 IPR006626 -
Pvu2g1036 397 SMART pbh1 182 208 IPR006626 -
Pvu2g1036 397 SMART pbh1 209 230 IPR006626 -
Pvu2g1036 397 PANTHER PUTATIVE-RELATED 12 396 - -
Pvu2g1036 397 SUPERFAMILY Pectin lyase-like 15 397 IPR011050 -
Pvu2g1036 397 PANTHER - 12 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1036 Pvu-Chr2 19879804 19882283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1036 31 397 Glycoside Hydrolase AT3G59850 66.848 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1036 K01184 - gmx:100806846 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1036 2 19879804 19882283 Pvu2g1036 2 19879804 19882283 ECH